Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021198
         (733 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    33   0.004
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    33   0.004
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   3.9  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   3.9  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   5.2  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   6.8  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   9.0  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 32.7 bits (71), Expect = 0.004
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
 Frame = +1

Query: 262 TAVVPLDLVKCRLQV--------DAEKYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSM 417
           T V P++ VK  LQV        + ++YK +++ F    +E+G     +G     I Y  
Sbjct: 26  TTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFP 85

Query: 418 QGLCKFGFYEVFKVAYAGMLDDETAY 495
                F F + +K  + G +D  T +
Sbjct: 86  TQALNFAFKDKYKQVFLGGVDKNTQF 111


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 32.7 bits (71), Expect = 0.004
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
 Frame = +1

Query: 262 TAVVPLDLVKCRLQV--------DAEKYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSM 417
           T V P++ VK  LQV        + ++YK +++ F    +E+G     +G     I Y  
Sbjct: 26  TTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFP 85

Query: 418 QGLCKFGFYEVFKVAYAGMLDDETAY 495
                F F + +K  + G +D  T +
Sbjct: 86  TQALNFAFKDKYKQVFLGGVDKNTQF 111


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 183 RSPVNLDRLNISLFAELVVFCQS 251
           R+P NL  +N+++   L++FC S
Sbjct: 84  RTPSNLFVINLAISNFLMMFCMS 106


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 183 RSPVNLDRLNISLFAELVVFCQS 251
           R+P NL  +N+++   L++FC S
Sbjct: 50  RTPSNLFVINLAISDFLMMFCMS 72


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 647 LDHLRPRFAEGARETRHGLD 588
           L+HLR   AEG  + ++ LD
Sbjct: 435 LNHLRANVAEGRNQRKNVLD 454


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 96  GPRNGEFRAASSNEEN 49
           GPRNG+ +  SS  EN
Sbjct: 210 GPRNGKRKRKSSTIEN 225


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 522 ASASAEFIADIALSPMEAAKVRIQTMPGFASTLREAWPKMVKNEGYG 662
           A  +A  +AD  L+ +E  +   Q   GFA T     P+++K E YG
Sbjct: 46  AKGAAVKLADFGLA-IEV-QGEAQAWFGFAGTPGYLSPEVLKKEPYG 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,731
Number of Sequences: 438
Number of extensions: 4119
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)