Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021197
(693 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0457 - 23800451-23800576,23801259-23801312,23801390-238015... 98 5e-21
12_02_0452 - 19188601-19188726,19189364-19189417,19189493-191896... 58 7e-09
06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315 35 0.070
02_05_0767 + 31609773-31610174,31610409-31610501,31610608-316106... 33 0.28
06_03_0706 + 23719392-23719641,23720337-23720383,23720988-237210... 32 0.50
12_01_0090 + 717524-719080 31 1.1
02_01_0567 - 4168164-4168250,4168672-4168828,4168951-4169090,417... 30 2.0
02_02_0455 + 10445417-10446931,10447370-10447903,10448198-104482... 29 4.6
05_01_0035 - 232656-232781,233212-233322,233419-233563,233749-23... 28 6.1
03_01_0620 - 4566616-4567374,4567455-4567977,4568106-4568635 28 6.1
02_02_0109 + 6830802-6833412,6833491-6833861 28 6.1
04_04_0702 + 27383876-27384862 28 8.1
>11_06_0457 -
23800451-23800576,23801259-23801312,23801390-23801539,
23801919-23802012,23802460-23802567,23802661-23802793,
23802903-23803139,23803488-23803586,23804968-23804983
Length = 338
Score = 98.3 bits (234), Expect = 5e-21
Identities = 58/149 (38%), Positives = 72/149 (48%)
Frame = +3
Query: 246 STDVQELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGNMTFQEALK 425
S V E + AD VCFDVDSTV DEGIDELA FCG G V TA+AM G + F+EAL
Sbjct: 116 SKGVLETWCNADAVCFDVDSTVCLDEGIDELADFCGAGKAVAEWTAKAMTGTVPFEEALA 175
Query: 426 KRLDIIRPNVGQIREFIEKFPVRLTPGIQS**KSYTREESSYI*FRADSGV**NRXXXXX 605
RL +I+P + Q+ + + K P R++PGI K +
Sbjct: 176 ARLSLIKPYLSQVDDCLVKRPPRISPGIADLIKKLKANNTDVFLVSGGFRQMIKPVASEL 235
Query: 606 XXXXXXXXXXXXXXXXNGEYAGFDENEPT 692
+GEYAGFD EPT
Sbjct: 236 GIPPENIIANQLLFGTSGEYAGFDPTEPT 264
Score = 51.6 bits (118), Expect = 6e-07
Identities = 24/45 (53%), Positives = 31/45 (68%)
Frame = +2
Query: 512 ELVKELHERGVIVYLVSGGFRSLIEPVAERLNIPTINIFANRLKF 646
+L+K+L V+LVSGGFR +I+PVA L IP NI AN+L F
Sbjct: 205 DLIKKLKANNTDVFLVSGGFRQMIKPVASELGIPPENIIANQLLF 249
>12_02_0452 -
19188601-19188726,19189364-19189417,19189493-19189642,
19189994-19190087,19190607-19190710
Length = 175
Score = 58.0 bits (134), Expect = 7e-09
Identities = 29/45 (64%), Positives = 34/45 (75%)
Frame = +2
Query: 512 ELVKELHERGVIVYLVSGGFRSLIEPVAERLNIPTINIFANRLKF 646
ELVK L + V VYLVSGGFR +I+PVA +L IP NIFAN+L F
Sbjct: 42 ELVKMLKAKNVDVYLVSGGFRQMIKPVAMQLGIPPENIFANQLLF 86
Score = 44.0 bits (99), Expect = 1e-04
Identities = 17/40 (42%), Positives = 30/40 (75%)
Frame = +3
Query: 390 MGGNMTFQEALKKRLDIIRPNVGQIREFIEKFPVRLTPGI 509
M G++ F++AL RL + +P++GQ+ + +EK P R++PGI
Sbjct: 1 MTGSVPFEKALAARLSLFKPSLGQVEDCMEKRPPRISPGI 40
>06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315
Length = 678
Score = 34.7 bits (76), Expect = 0.070
Identities = 27/86 (31%), Positives = 41/86 (47%)
Frame = -3
Query: 448 GLMMSSLFFNASWNVILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVL 269
G +S++ NA +LP SA S L+SSP P + P S T ++ T +
Sbjct: 596 GDKLSAVLANAQ--DLLPGSPSATSSLSSSPSP-----APSPDSA-TASRSASPTSARPA 647
Query: 268 NNSWTSVEATSR*STPVRASSTSRTA 191
+SWT A + ++P A TS T+
Sbjct: 648 TSSWTCTSAATASASPATAKRTSSTS 673
>02_05_0767 +
31609773-31610174,31610409-31610501,31610608-31610668,
31610797-31610865,31611274-31611440
Length = 263
Score = 32.7 bits (71), Expect = 0.28
Identities = 21/67 (31%), Positives = 37/67 (55%)
Frame = -3
Query: 397 PPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSWTSVEATSR*STPV 218
PPI+S++SL+ S+P P + P +TV + S + S+ ++S +S ++ S PV
Sbjct: 4 PPISSSLSLMASNPIPS--PPVAKPGRPLTVAACSNSSSSS-SSSSPSSTSCSAAWSLPV 60
Query: 217 RASSTSR 197
S+ R
Sbjct: 61 ATSAGRR 67
>06_03_0706 +
23719392-23719641,23720337-23720383,23720988-23721060,
23721323-23721540,23721868-23722170,23722322-23722399,
23723064-23723549,23723875-23724312
Length = 630
Score = 31.9 bits (69), Expect = 0.50
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = -3
Query: 406 VILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSA-VLNNS 260
V+ PP +S + + SSP +N + SMPSS T ES S T +A VL+ S
Sbjct: 486 VLAPPSSS--NAVESSPKIENSGTKSMPSSQHTSESDSATTSAAQVLDKS 533
>12_01_0090 + 717524-719080
Length = 518
Score = 30.7 bits (66), Expect = 1.1
Identities = 28/79 (35%), Positives = 42/79 (53%)
Frame = -3
Query: 505 PGVSLTGNFSMNSLI*PTLGLMMSSLFFNASWNVILPPIASAVSLLTSSPFPQNLASSSM 326
P S G +++L+ LGL+ S F +A + LPP SA+SLL +P P L S S+
Sbjct: 13 PRRSAAGGHQLHALL-AKLGLLHRSEFLSALLSR-LPPSPSALSLLLEAP-PAVL-SPSL 68
Query: 325 PSSCMTVESTSKQTQSAVL 269
+ S+S+ SA+L
Sbjct: 69 VCPVIVAFSSSQAPSSALL 87
>02_01_0567 -
4168164-4168250,4168672-4168828,4168951-4169090,
4170318-4170456,4170562-4170830,4170914-4171000,
4171259-4171327,4171427-4171455,4171544-4171950,
4172906-4172977,4173150-4173221,4173299-4173370,
4173454-4173519,4173717-4173785,4173866-4173995,
4174846-4174975
Length = 664
Score = 29.9 bits (64), Expect = 2.0
Identities = 28/93 (30%), Positives = 46/93 (49%)
Frame = -3
Query: 439 MSSLFFNASWNVILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNS 260
+SS F+ S L ++S +L +PF ++A S+ PSS T ST QT S+ ++
Sbjct: 182 ISSNNFSGSLPPSLGSLSSLTTLKDGNPFNTSIAPSASPSSTPT-GSTPTQTPSSPSSSG 240
Query: 259 WTSVEATSR*STPVRASSTSRTAGCFSNCKEPS 161
S ++ S+ ST+R + S+ K S
Sbjct: 241 TPSPSSSPSNSS---GGSTARDSSSPSSRKHKS 270
>02_02_0455 +
10445417-10446931,10447370-10447903,10448198-10448278,
10448699-10448770,10449643-10449669
Length = 742
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = -1
Query: 324 LHLV*RSSLHRSKRSPLS*TTPGRLLRRHHADRH 223
L + RS L + K SPL+ T GRLLR H H
Sbjct: 388 LECIGRSILPKLKGSPLAAKTLGRLLRMDHHTTH 421
>05_01_0035 - 232656-232781,233212-233322,233419-233563,233749-233882,
234341-234412,234485-234548,234632-234699,234894-235129,
236857-237166,237495-238460,238752-238931,239041-239346,
239593-239727,239810-240046,240120-240308,240521-240709,
240929-241024,241117-241323,241700-241893,242979-243216
Length = 1400
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = -3
Query: 316 CMTVESTSKQTQSAVLNNSWTSVEATSR*STPVRASSTSRTAGCFSNCKE 167
C E+ + T + ++SWT + R S + +S R GC KE
Sbjct: 1021 CNIKEAILRSTGLCINSSSWTGIPDHCRFSFALESSEFERAMGCIVRFKE 1070
>03_01_0620 - 4566616-4567374,4567455-4567977,4568106-4568635
Length = 603
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = -3
Query: 397 PPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSWTSVEATSR*STPV 218
PP A +SP P + + + + ++S + ++++ SW+ E+ +R S V
Sbjct: 9 PPPLPAQKRPRASPPPDQVLDNVLETVLQFLDSARDRCAASLVCRSWSRAESATRASVAV 68
Query: 217 R---ASSTSRTAGCF 182
R A+S +R A F
Sbjct: 69 RNLLAASPARVARRF 83
>02_02_0109 + 6830802-6833412,6833491-6833861
Length = 993
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 530 HERGVIVYLVSGGFRSLIEPVAERLNIPTINIFANRL 640
H++ +YL + GF IEP LN+ I++ +N L
Sbjct: 266 HKKLQNLYLYANGFTGEIEPNVSALNLVEIDVSSNEL 302
>04_04_0702 + 27383876-27384862
Length = 328
Score = 27.9 bits (59), Expect = 8.1
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = -3
Query: 397 PPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSWTSVEATSR*STPV 218
PP SA + T+ Q + V S + +T++ N+S S TSR +TP
Sbjct: 213 PPAHSAAASTTNKRKRQPSEDPDDGVEVIGVVSKAVKTEAPTSNSSSLSSSLTSRDTTPA 272
Query: 217 RASSTSRTAG 188
+S+ + AG
Sbjct: 273 TSSAGAEHAG 282
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,748,175
Number of Sequences: 37544
Number of extensions: 313803
Number of successful extensions: 1016
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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