Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021197
(693 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55851| Best HMM Match : Hydrolase (HMM E-Value=0.95) 61 1e-09
SB_40415| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.89
SB_35730| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_55615| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_12839| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06) 29 2.7
SB_36190| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_58980| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_23226| Best HMM Match : Herpes_UL43 (HMM E-Value=1.9) 28 8.3
>SB_55851| Best HMM Match : Hydrolase (HMM E-Value=0.95)
Length = 209
Score = 60.9 bits (141), Expect = 1e-09
Identities = 24/45 (53%), Positives = 35/45 (77%)
Frame = +3
Query: 234 RDVASTDVQELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEV 368
R + ++ + ++++AD VCFDVDSTV+ E IDELA FCG+G+EV
Sbjct: 2 RQMTESETRVIWKSADAVCFDVDSTVVTGEAIDELASFCGRGEEV 46
Score = 52.0 bits (119), Expect = 4e-07
Identities = 22/47 (46%), Positives = 33/47 (70%)
Frame = +2
Query: 506 YTELVKELHERGVIVYLVSGGFRSLIEPVAERLNIPTINIFANRLKF 646
+ ++ L G VYLVSGGF+S++EP+A+ L IP N+FAN++ F
Sbjct: 55 FRNVIDCLLSHGTQVYLVSGGFQSILEPIAKDLGIPKTNVFANKILF 101
>SB_40415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1512
Score = 31.1 bits (67), Expect = 0.89
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Frame = -3
Query: 394 PIASAVSLLTSSPFP-QNLASSSMPSSCMTVESTSKQTQSAVLNNSWTSVEATSR-*STP 221
P+A + SL +SS + + LAS S SC +VE++++ NNS++ ++ R S P
Sbjct: 886 PLAPSTSLTSSSAYSTEGLASGSESGSCPSVEASAEAKDCD--NNSYSESDSPRREYSDP 943
Query: 220 VRA---SSTSRTAGCFSNCKEPS 161
+R SS ++ S+ PS
Sbjct: 944 MRGYPNSSIDNSSEADSSLGSPS 966
>SB_35730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/70 (30%), Positives = 39/70 (55%)
Frame = -3
Query: 388 ASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSWTSVEATSR*STPVRAS 209
+S+ S +SS + +SSS +S + S+S + S+ NNS +S ++S S+ +S
Sbjct: 196 SSSSSSSSSSSSSSSSSSSSSSNSSSSSSSSSSSSSSSSSNNSSSSSSSSSSSSSSSSSS 255
Query: 208 STSRTAGCFS 179
S+S ++ S
Sbjct: 256 SSSSSSSSSS 265
>SB_55615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 196
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = -1
Query: 645 NLSRLAKMLIVGMFSLSATGSIRLLNPPETRYTMTPLSCNSFTNSVYQ 502
N S K +VG F LS + L+ P Y +TP SC+ F VY+
Sbjct: 1 NFSLENKKEVVGSFILSKGTNRFCLSEPGV-YNLTPKSCHRFEQEVYK 47
>SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1067
Score = 29.9 bits (64), Expect = 2.0
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Frame = -3
Query: 436 SSLFFNASWNVILPPIASAVSLL--TSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNN 263
SS+ N++ + ++ +A + S+L T+S ++ SSSM ++ T ST S NN
Sbjct: 400 SSMTTNSTTSTLVEAVALSSSVLPTTTSVLTSSMESSSMATTSTT--STPSLESSMTSNN 457
Query: 262 SWTSVEATSR*STPVRASSTS 200
+ ++ S+PV ++TS
Sbjct: 458 TTLTLAEAVATSSPVLPTTTS 478
Score = 28.7 bits (61), Expect = 4.7
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 10/78 (12%)
Frame = -3
Query: 397 PPIASAVSLLTSSPFPQNLAS---SSMPS--SCMTVESTSKQTQSAVLNNSW-----TSV 248
P + + S+LTSS ++A+ SS PS S MT ST+ AV +S TSV
Sbjct: 877 PVLPTTTSVLTSSMESSSMATTSTSSTPSLESSMTTNSTTSTLAEAVAISSLVLPTTTSV 936
Query: 247 EATSR*STPVRASSTSRT 194
+S S+ + +STS T
Sbjct: 937 LTSSMESSSMATTSTSST 954
Score = 27.9 bits (59), Expect = 8.3
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Frame = -3
Query: 397 PPIASAVSLLTSSPFPQNLASSSMPS-----SCMTVESTSKQTQSAVLNNS-----WTSV 248
P + + S+LTSS ++A++S S S MT ST+ AV +S TSV
Sbjct: 826 PVLPTTTSVLTSSMESSSIATTSTTSTPSLESSMTTNSTTSTLAEAVAISSPVLPTTTSV 885
Query: 247 EATSR*STPVRASSTSRT 194
+S S+ + +STS T
Sbjct: 886 LTSSMESSSMATTSTSST 903
>SB_12839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 96
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = -1
Query: 645 NLSRLAKMLIVGMFSLSATGSIRLLNPPETRYTMTPLSCNSFTNSVYQ 502
N S K +VG F LS + L+ P Y +TP SC+ F VY+
Sbjct: 47 NFSLENKKEVVGSFILSKGTNRFCLSEPGV-YNLTPKSCHRFEQEVYK 93
>SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06)
Length = 863
Score = 29.5 bits (63), Expect = 2.7
Identities = 24/75 (32%), Positives = 42/75 (56%)
Frame = -3
Query: 403 ILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSWTSVEATSR*ST 224
+ PP +S+ +SSP P + +SSS SS + S+S + S+ ++S +S ++S
Sbjct: 570 VSPPSSSS----SSSPPPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---- 621
Query: 223 PVRASSTSRTAGCFS 179
+SS+S + G FS
Sbjct: 622 --SSSSSSASLGYFS 634
>SB_36190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 993
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 488 WKFLNEFSDLTDVRPDDVQSLLQRFLE 408
WK + EF + ++R D+ LL RF+E
Sbjct: 615 WKAMAEFPGVVEIRSRDIVPLLLRFIE 641
>SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = -3
Query: 367 TSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSWTSVEATSR*STPVRASSTSRTA 191
TS+P + ++S PS+ T ST++ ++ T+ + STP S+T+ +A
Sbjct: 39 TSTPRTGSTTTTSAPSTSTTSNSTTRAPSTSTPRAGSTTTTSAPSTSTPRTGSTTTTSA 97
>SB_58980| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/78 (24%), Positives = 33/78 (42%)
Frame = +3
Query: 168 SLQFEKQPAVRDVEDALTGVDQRDVASTDVQELFRTADCVCFDVDSTVIQDEGIDELAKF 347
+L F + +V +DA Q A ++ L A C+ D ++ D G+ +
Sbjct: 88 NLPFGRDTSVFSTQDASGSTSQ---AGNIIEGLEAGATCLLIDEVRSLYDDFGVSTILVM 144
Query: 348 CGKGDEVKRLTAEAMGGN 401
G GD + + AE + N
Sbjct: 145 GGSGDYFQSIAAETIKTN 162
>SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1626
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = -3
Query: 397 PPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSWTSVEATS 236
PP+ +S L PQ ++S+ C V ST +QS + TSV TS
Sbjct: 408 PPVWVPLSQLNYQIPPQGNTAASVAPGCKVVMSTLSSSQSQNPVTTSTSVATTS 461
>SB_23226| Best HMM Match : Herpes_UL43 (HMM E-Value=1.9)
Length = 749
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = -3
Query: 397 PPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSWTSVEATS 236
PP+ +S L PQ ++S+ C V ST +QS + TSV TS
Sbjct: 388 PPVWVPLSQLNYQIPPQGNTAASVAPGCKVVMSTLSSSQSQNPVTTSTSVATTS 441
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,265,720
Number of Sequences: 59808
Number of extensions: 362008
Number of successful extensions: 1334
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1327
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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