Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021197
         (693 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    27   0.22 
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              22   4.8  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   4.8  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   8.4  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 5   HSTEACSSYFPQSGSFIITLVTFTKDK*Y 91
           H    CS  F QSG  +I + T T +K Y
Sbjct: 176 HKCTVCSKTFIQSGQLVIHMRTHTGEKPY 204


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 16/52 (30%), Positives = 21/52 (40%)
 Frame = -2

Query: 431 SLLQRFLECHIAAHCFRR*SFNLVSFPAELGQFIDAFILYDGRVYIEANAVR 276
           SLL   L C  + HC  R SF      A     ++A     G   ++  AVR
Sbjct: 8   SLLITCLICSPSVHCGTRPSFVSDEMIATAASVVNACQTQTGVATVDIEAVR 59


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 538 RSHRISSFGRIQESNRTGR 594
           RSHR  S  R Q SN+  R
Sbjct: 70  RSHRFKSLPRCQLSNKRDR 88


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 446 PDDVQSLLQRFLECHI 399
           PD+VQ L +RFL  ++
Sbjct: 393 PDEVQHLARRFLNNYL 408


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,352
Number of Sequences: 438
Number of extensions: 3314
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)