Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021197
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearl...   114   6e-26
At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearl...   114   6e-26
At2g30340.1 68415.m03692 LOB domain protein 13 / lateral organ b...    30   1.3  
At1g76890.2 68414.m08948 trihelix DNA-binding protein / GT-2 fac...    30   1.7  
At1g76890.1 68414.m08947 trihelix DNA-binding protein / GT-2 fac...    30   1.7  
At5g25265.1 68418.m02995 expressed protein                             29   3.9  
At3g08670.1 68416.m01007 expressed protein                             28   5.1  
At5g58410.1 68418.m07314 expressed protein contains similarity t...    27   8.9  
At5g55820.1 68418.m06956 expressed protein                             27   8.9  
At5g45000.1 68418.m05518 Toll-Interleukin-Resistance (TIR) domai...    27   8.9  
At3g63140.1 68416.m07091 mRNA-binding protein, putative similar ...    27   8.9  
At2g04270.2 68415.m00417 glycoside hydrolase starch-binding doma...    27   8.9  
At2g04270.1 68415.m00416 glycoside hydrolase starch-binding doma...    27   8.9  
At1g27960.1 68414.m03425 expressed protein contains Pfam profile...    27   8.9  

>At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearly
           identical to 3-phosphoserine phosphatase GI:3759177 from
           [Arabidopsis thaliana]
          Length = 295

 Score =  114 bits (274), Expect = 6e-26
 Identities = 62/167 (37%), Positives = 89/167 (53%)
 Frame = +3

Query: 192 AVRDVEDALTGVDQRDVASTDVQELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVK 371
           +V+  E +  G +   V S ++ +L+R+ + VCFDVDSTV  DEGIDELA+FCG G  V 
Sbjct: 55  SVQPHELSTLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCVDEGIDELAEFCGAGKAVA 114

Query: 372 RLTAEAMGGNMTFQEALKKRLDIIRPNVGQIREFIEKFPVRLTPGIQS**KSYTREESSY 551
             TA AMGG++ F+EAL  RL + +P++ ++ E+++K P RL+PGI+   K         
Sbjct: 115 EWTARAMGGSVPFEEALAARLSLFKPSLSKVEEYLDKRPPRLSPGIEELVKKLRANNIDV 174

Query: 552 I*FRADSGV**NRXXXXXXXXXXXXXXXXXXXXXNGEYAGFDENEPT 692
                      N                      +GE+ GFDENEPT
Sbjct: 175 YLISGGFRQMINPVASILGIPRENIFANNLLFGNSGEFLGFDENEPT 221



 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 27/45 (60%), Positives = 31/45 (68%)
 Frame = +2

Query: 512 ELVKELHERGVIVYLVSGGFRSLIEPVAERLNIPTINIFANRLKF 646
           ELVK+L    + VYL+SGGFR +I PVA  L IP  NIFAN L F
Sbjct: 162 ELVKKLRANNIDVYLISGGFRQMINPVASILGIPRENIFANNLLF 206


>At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearly
           identical to 3-phosphoserine phosphatase GI:3759177 from
           [Arabidopsis thaliana]
          Length = 295

 Score =  114 bits (274), Expect = 6e-26
 Identities = 62/167 (37%), Positives = 89/167 (53%)
 Frame = +3

Query: 192 AVRDVEDALTGVDQRDVASTDVQELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVK 371
           +V+  E +  G +   V S ++ +L+R+ + VCFDVDSTV  DEGIDELA+FCG G  V 
Sbjct: 55  SVQPHELSTLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCVDEGIDELAEFCGAGKAVA 114

Query: 372 RLTAEAMGGNMTFQEALKKRLDIIRPNVGQIREFIEKFPVRLTPGIQS**KSYTREESSY 551
             TA AMGG++ F+EAL  RL + +P++ ++ E+++K P RL+PGI+   K         
Sbjct: 115 EWTARAMGGSVPFEEALAARLSLFKPSLSKVEEYLDKRPPRLSPGIEELVKKLRANNIDV 174

Query: 552 I*FRADSGV**NRXXXXXXXXXXXXXXXXXXXXXNGEYAGFDENEPT 692
                      N                      +GE+ GFDENEPT
Sbjct: 175 YLISGGFRQMINPVASILGIPRENIFANNLLFGNSGEFLGFDENEPT 221



 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 27/45 (60%), Positives = 31/45 (68%)
 Frame = +2

Query: 512 ELVKELHERGVIVYLVSGGFRSLIEPVAERLNIPTINIFANRLKF 646
           ELVK+L    + VYL+SGGFR +I PVA  L IP  NIFAN L F
Sbjct: 162 ELVKKLRANNIDVYLISGGFRQMINPVASILGIPRENIFANNLLF 206


>At2g30340.1 68415.m03692 LOB domain protein 13 / lateral organ
           boundaries domain protein 13 (LBD13) identical to LOB
           DOMAIN 13 [Arabidopsis thaliana] GI:17227158 SP|Q9AT61
          Length = 268

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = -3

Query: 397 PPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSA 275
           PP      LL+S P P      S+PS  M V S+S    SA
Sbjct: 199 PPTPRPPRLLSSQPAPPPTPPVSLPSPSMVVSSSSSSNSSA 239


>At1g76890.2 68414.m08948 trihelix DNA-binding protein / GT-2 factor
           (GT2) identical to GT2 factor [Arabidopsis thaliana]
           GI:416490, GI:2664202 (DNA binding factor GT-2 from
           Arabidopsis)
          Length = 575

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 502 LVYRVSERVTRERSHRISSFGRIQESNRT 588
           L YR  ER++RE + R+   GRI   + T
Sbjct: 287 LEYREKERISREEAWRVQEIGRINREHET 315


>At1g76890.1 68414.m08947 trihelix DNA-binding protein / GT-2 factor
           (GT2) identical to GT2 factor [Arabidopsis thaliana]
           GI:416490, GI:2664202 (DNA binding factor GT-2 from
           Arabidopsis)
          Length = 498

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 502 LVYRVSERVTRERSHRISSFGRIQESNRT 588
           L YR  ER++RE + R+   GRI   + T
Sbjct: 210 LEYREKERISREEAWRVQEIGRINREHET 238


>At5g25265.1 68418.m02995 expressed protein
          Length = 366

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -2

Query: 236 TLIDTSESVFNVAYCRLLFKL*RAISVASSPSNETIMIEFTSIL 105
           T +  S+SV+N   CR+++   + I  ++ P +E  M  FT IL
Sbjct: 72  TAVTASDSVYNTWQCRVMYYWFKKIQASAGPGSE--MGGFTRIL 113


>At3g08670.1 68416.m01007 expressed protein 
          Length = 567

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 31/102 (30%), Positives = 46/102 (45%)
 Frame = -3

Query: 505 PGVSLTGNFSMNSLI*PTLGLMMSSLFFNASWNVILPPIASAVSLLTSSPFPQNLASSSM 326
           PG  L GN S +SL  P +    S+   +AS    L    S     +S P   +  +   
Sbjct: 105 PGTPL-GNDSHSSLAAPKIA--SSARASSASKASRLSVSQSESGYHSSRPARSSSVTRPS 161

Query: 325 PSSCMTVESTSKQTQSAVLNNSWTSVEATSR*STPVRASSTS 200
            S+      TS ++ S++LN S  SV +  R S+P   SS+S
Sbjct: 162 ISTSQYSSFTSGRSPSSILNTSSASVSSYIRPSSPSSRSSSS 203


>At5g58410.1 68418.m07314 expressed protein contains similarity to
           hypothetical proteins
          Length = 1873

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +1

Query: 124 IIIVSLLGEEATEMALYSLKSNLQYATLKTLSLVSISVM 240
           +I+V+    E  + + +SLKS  Q ATL T  L SI ++
Sbjct: 831 VIVVAKFAAEVIDGSFFSLKSLSQDATLLTTVLSSIFII 869


>At5g55820.1 68418.m06956 expressed protein
          Length = 1826

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 612  GMFSLSATGSIRLLNPPETRYTMTPLSCNSFTNSV 508
            G  +    G+ R + PP +R++   LSCNS   +V
Sbjct: 1442 GKENQGGAGAKRNVKPPSSRFSKPKLSCNSSLTTV 1476


>At5g45000.1 68418.m05518 Toll-Interleukin-Resistance (TIR)
           domain-containing protein domain signature TIR exists,
           suggestive of a disease resistance protein.
          Length = 371

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 479 LNEFSDLTDVRPDDVQSLLQRFLECHIA 396
           +N F+D  +VR  D+Q+LL R  E  +A
Sbjct: 43  INVFTDEIEVRGRDIQNLLSRIEESRVA 70


>At3g63140.1 68416.m07091 mRNA-binding protein, putative similar to
           mRNA binding protein precursor (GI:26453355)
           [Lycopersicon esculentum]
          Length = 406

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
 Frame = -3

Query: 445 LMMSSLFFNASW-----NVILPPIASAVSLLTSSPFPQNLASSSMPSSCM 311
           L  SSLFF++       N+++PP     SL +SS    +L+SSS  SS +
Sbjct: 4   LSSSSLFFSSKTTSPISNLLIPPSLHRFSLPSSSSSFSSLSSSSSSSSSL 53


>At2g04270.2 68415.m00417 glycoside hydrolase starch-binding
           domain-containing protein contains Pfam profile: PF00686
           starch binding domain
          Length = 871

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = -3

Query: 325 PSSCMTVESTSKQTQSAVLNNSWTSVEATSR*STPVRASSTSRTAGCFSNCKEPS 161
           P   ++V S+  Q +  ++ +SW S+  +S+        S    A  F NC  P+
Sbjct: 31  PQFSLSVPSSVNQDRKIIIRDSWMSMSISSKSQESYGWGSWIDDAYLFPNCVTPA 85


>At2g04270.1 68415.m00416 glycoside hydrolase starch-binding
           domain-containing protein contains Pfam profile: PF00686
           starch binding domain
          Length = 996

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = -3

Query: 325 PSSCMTVESTSKQTQSAVLNNSWTSVEATSR*STPVRASSTSRTAGCFSNCKEPS 161
           P   ++V S+  Q +  ++ +SW S+  +S+        S    A  F NC  P+
Sbjct: 156 PQFSLSVPSSVNQDRKIIIRDSWMSMSISSKSQESYGWGSWIDDAYLFPNCVTPA 210


>At1g27960.1 68414.m03425 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 539

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 294 DVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGN 401
           + D +V+QD+ I     FCG+G E   + A+    N
Sbjct: 24  NTDQSVLQDQDIVSSRPFCGQGTESFHIGADTPRSN 59


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,626,717
Number of Sequences: 28952
Number of extensions: 257503
Number of successful extensions: 877
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)