Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021196
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    27   3.0  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    27   3.0  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   5.2  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    25   6.8  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    25   6.8  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   6.8  

>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = +3

Query: 285 SREMRIRHDPQYFKQ----NCYTNGKYHTDALNDSDMKSVYGEE 404
           S+E++   DPQYF +      Y NG  + ++LN SD   +  +E
Sbjct: 435 SKELKAPPDPQYFTEKTGATTYVNG--NDESLNVSDFPQIVEQE 476


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 351 YHTDALNDSDMKSVYGEELFNKLHILPDPLMKNL 452
           Y TDAL  +   S+Y     + + +LP+P + NL
Sbjct: 144 YETDALLKNSATSIYKAVFPDLVQVLPNPEINNL 177


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 466 ANVSPRFFINGSGSICNLLNNSSPYTLFIS 377
           +NV+PR FI    S+C ++ N  PY+  +S
Sbjct: 396 SNVNPRGFICAEKSVCRVVEN--PYSNTVS 423


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 222 RKDFNSVSCATKRNFSKMNFLSREMRIRH 308
           R  F    C  +R+FS+ + L R +R++H
Sbjct: 607 RPVFRCEICGDQRHFSRHDALVRHLRVKH 635


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +3

Query: 363 ALNDSDMKSVYGEEL 407
           AL+DSD++S Y EEL
Sbjct: 299 ALDDSDLESAYNEEL 313


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 81   LTRNNTNKYVKTLNCVPNKDLFNLNSDC 164
            L +NN N +V+    VPN DL   ++ C
Sbjct: 3270 LDKNNNNDFVRLERFVPNVDLVRGHTMC 3297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,636,271
Number of Sequences: 5004
Number of extensions: 57455
Number of successful extensions: 171
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)