Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021196
(630 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1073 - 33895608-33895880,33896133-33896180,33896273-338965... 30 1.3
02_03_0390 + 18448671-18448889,18449567-18449632,18449702-184497... 30 1.7
12_01_0977 - 9900073-9900521,9900594-9900698,9900770-9900959,990... 29 3.0
06_01_0548 + 3904487-3904711,3904805-3905064,3905284-3905608,390... 29 4.0
06_01_0545 + 3892664-3892888,3892914-3893173,3893393-3893717,389... 29 4.0
06_01_0535 + 3854608-3854832,3854926-3855185,3855405-3855729,385... 29 4.0
02_05_0678 - 30814192-30814310,30814636-30814660,30814948-308150... 28 5.3
02_01_0344 + 2467191-2468282 28 5.3
08_01_0404 - 3590296-3590409,3590529-3590819,3592414-3592461,359... 28 7.0
02_02_0583 + 11813372-11813738,11823130-11823209,11823357-118235... 27 9.3
01_01_1046 - 8246740-8247504 27 9.3
>02_05_1073 -
33895608-33895880,33896133-33896180,33896273-33896509,
33897233-33897269,33898603-33898913
Length = 301
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -2
Query: 386 LHIAIVQGIRVVFSVGITILFEILR 312
LH AI+ GIRV++ V +T+ F+I +
Sbjct: 171 LHSAILSGIRVLYPVKVTLWFDIFK 195
>02_03_0390 + 18448671-18448889,18449567-18449632,18449702-18449761,
18449864-18449959,18452287-18452447,18452669-18452790,
18452872-18453239,18453653-18453739,18453835-18453969,
18454349-18454471,18454771-18454854,18455023-18455187,
18455310-18455486,18455660-18455773,18455912-18456016,
18457056-18457174,18457244-18457385,18457461-18457555,
18457757-18457862,18458125-18458204,18458285-18458461,
18459828-18459912,18460024-18460104,18460208-18460351,
18460468-18460563,18460654-18460854,18461462-18461895,
18462417-18462478,18462622-18462872,18462956-18463030,
18463110-18463300,18463696-18463867,18463956-18464020,
18464646-18464778,18464861-18464962,18465047-18465130,
18465656-18465730,18465818-18465877,18465967-18466223,
18466560-18466608,18466781-18466941,18467013-18467079,
18467174-18467299,18467422-18467592,18468566-18468769,
18469059-18469165,18469608-18469737,18469774-18469959,
18470704-18470742
Length = 2202
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 81 LTRNNTNKYVKTLNCVPNKDLFNLNSDCCVAF 176
+ RNNTN +TLN NK L+ +S+C + F
Sbjct: 952 VARNNTNDQYQTLNDPVNK-LYTTHSECSIEF 982
>12_01_0977 -
9900073-9900521,9900594-9900698,9900770-9900959,
9901035-9901093,9901297-9901688,9901770-9902059,
9902146-9903030
Length = 789
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Frame = +3
Query: 366 LNDSDMKSVYGEELFNKLHILPDPLMKN------LGDTLAMIMTEVKKSRVK 503
LN+S ++ E+F+KL + PD KN +G ++A+ MT+ R++
Sbjct: 680 LNNSGPSALDATEIFDKLRVAPDVYFKNIKKAGSMGASMALAMTKSLYPRIE 731
>06_01_0548 +
3904487-3904711,3904805-3905064,3905284-3905608,
3905729-3905971
Length = 350
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +3
Query: 336 YTNGKYHTDALNDSDMKS--VYGEELFNKLHILPDPLMKNLGDTLAMIMTEVKKSRVKRI 509
+++G T L D D+ + + + + + P+ L+ NLGDT+ ++ + +S V R+
Sbjct: 225 HSDGSLFTILLVDEDVGGLQIQRDGKWYNVQVTPNTLLINLGDTMEVLCNGIFRSPVHRV 284
>06_01_0545 +
3892664-3892888,3892914-3893173,3893393-3893717,
3893838-3893999,3894192-3894272
Length = 350
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +3
Query: 336 YTNGKYHTDALNDSDMKS--VYGEELFNKLHILPDPLMKNLGDTLAMIMTEVKKSRVKRI 509
+++G T L D D+ + + + + + P+ L+ NLGDT+ ++ + +S V R+
Sbjct: 225 HSDGSLFTILLVDEDVGGLQIQRDGKWYNVQVTPNTLLINLGDTMEVLCNGIFRSPVHRV 284
>06_01_0535 +
3854608-3854832,3854926-3855185,3855405-3855729,
3855850-3856092
Length = 350
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +3
Query: 336 YTNGKYHTDALNDSDMKS--VYGEELFNKLHILPDPLMKNLGDTLAMIMTEVKKSRVKRI 509
+++G T L D D+ + + + + + P+ L+ NLGDT+ ++ + +S V R+
Sbjct: 225 HSDGSLFTILLVDEDVGGLQIQRDGKWYNVQVTPNTLLINLGDTMEVLCNGIFRSPVHRV 284
>02_05_0678 -
30814192-30814310,30814636-30814660,30814948-30815039,
30815119-30815170
Length = 95
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/37 (43%), Positives = 17/37 (45%)
Frame = -1
Query: 288 GSKNSFSRNFFSLHTIHY*SLFLYQAKVCEGICNTFP 178
GSK+ FS N L Y F A EGIC FP
Sbjct: 2 GSKDGFSNNKL-LDDFGYNPTFKDDATAAEGICTVFP 37
>02_01_0344 + 2467191-2468282
Length = 363
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -3
Query: 544 QLYPIESIRHQFILLTLDFFT 482
Q+YP S H+F+L+ D+FT
Sbjct: 79 QIYPSSSKGHRFVLVATDYFT 99
>08_01_0404 -
3590296-3590409,3590529-3590819,3592414-3592461,
3592559-3592795,3593668-3593704,3594311-3594627
Length = 347
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2
Query: 386 LHIAIVQGIRVVFSVGITILFEILRIV 306
LH AI+ G+RVV V T F+I + V
Sbjct: 173 LHSAILSGLRVVCHVNFTFCFDIYKNV 199
>02_02_0583 +
11813372-11813738,11823130-11823209,11823357-11823507,
11832674-11832778,11832831-11833282
Length = 384
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Frame = +3
Query: 369 NDSDMKSVYGEELFNKLHILPDPLMKN------LGDTLAMIMTEVKKSRV 500
N++ + E+F+KL + PD KN +G +LA+ MT+ S++
Sbjct: 275 NNNGPSTFDASEIFDKLRVAPDTYFKNIKEAGSMGASLALAMTKSLYSKI 324
>01_01_1046 - 8246740-8247504
Length = 254
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +3
Query: 162 CCVAFWGKCCRYPHR 206
C VAF CCRY HR
Sbjct: 44 CGVAFCSHCCRYHHR 58
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,874,092
Number of Sequences: 37544
Number of extensions: 322699
Number of successful extensions: 715
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -