Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021196
         (630 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7325| Best HMM Match : SNF2_N (HMM E-Value=8.9e-32)                 32   0.44 
SB_15263| Best HMM Match : Jun (HMM E-Value=1.8)                       30   1.3  
SB_15137| Best HMM Match : SRCR (HMM E-Value=4.9e-28)                  30   1.3  
SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17)                    29   4.1  
SB_46027| Best HMM Match : Fibrinogen_C (HMM E-Value=0.24)             28   7.2  
SB_22215| Best HMM Match : Rib_hydrolayse (HMM E-Value=0.035)          28   7.2  
SB_58993| Best HMM Match : EGF_CA (HMM E-Value=0)                      27   9.5  
SB_46333| Best HMM Match : EGF (HMM E-Value=1.10001e-40)               27   9.5  
SB_43767| Best HMM Match : DUF278 (HMM E-Value=3.9)                    27   9.5  
SB_31989| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_25108| Best HMM Match : Cornifin (HMM E-Value=0.00015)              27   9.5  
SB_57080| Best HMM Match : EGF_CA (HMM E-Value=1.4013e-43)             27   9.5  
SB_30622| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-14)                 27   9.5  

>SB_7325| Best HMM Match : SNF2_N (HMM E-Value=8.9e-32)
          Length = 884

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
 Frame = -2

Query: 323 EILRIVSDAHFTAQKIHF-REISFRCTRYTIKVFSYIRRRS--VRVSATLSP 177
           ++L +V    F A  I F +E++FRC+++    FS+IR+ S  ++ SA L P
Sbjct: 28  KVLVVVWKPKFAAPTIVFVKEMAFRCSKFFASRFSHIRKSSKDIKRSAFLLP 79


>SB_15263| Best HMM Match : Jun (HMM E-Value=1.8)
          Length = 315

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -2

Query: 581 TPARVLIIPLKNPVIPDRVDSPPIYPLD 498
           TPA + + P+ +P+ P R   PPI+P+D
Sbjct: 149 TPAPMTLPPI-SPIDPPRTQPPPIFPID 175


>SB_15137| Best HMM Match : SRCR (HMM E-Value=4.9e-28)
          Length = 327

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 15  VTMEPLSDFNFETNKSTSNKDFLTRNNTNKYVKTLNCVPNKDLFNLNSD 161
           + M+  ++ N   N STSN +  TRNN N    + N   N +    NS+
Sbjct: 114 IGMQSNNNNNSNNNNSTSNSNSSTRNNNNSTSNSNNSTRNNNNSTSNSN 162



 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3

Query: 54  NKSTSNKDFLTRNNTNKYVKTLNCVPNKDLFNLNSD 161
           N STSN +  TRNN N    + N   N +    NS+
Sbjct: 141 NNSTSNSNNSTRNNNNSTSNSNNSTSNSNNSTSNSN 176


>SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17)
          Length = 1860

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = +3

Query: 288  REMRIR----HDPQYFKQNCYTNGKYHTDALNDSDMKSVYGEELFNKLHILPD 434
            RE R+R    H PQ FK+ C      H       D  +++  ++ N L  LPD
Sbjct: 914  REARVRLPKAHQPQLFKEYCPQVQAIHNYTPQQPDELALHEGDVINVLRKLPD 966


>SB_46027| Best HMM Match : Fibrinogen_C (HMM E-Value=0.24)
          Length = 901

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 273 MNFLSREMRIRHDPQYFKQNCYTNGKYHTDALNDSDMK-SVYGEELFNKL 419
           M    RE   +++  Y+K +   N +   D L++SDMK   Y +  F KL
Sbjct: 424 MKIDGREKTFKYESSYWKNHNVYNTESIADGLDNSDMKLHTYSKLPFEKL 473


>SB_22215| Best HMM Match : Rib_hydrolayse (HMM E-Value=0.035)
          Length = 186

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/61 (29%), Positives = 24/61 (39%)
 Frame = -1

Query: 366 GHPCGIFRWYNNFV*NTADRV*CAFHGSKNSFSRNFFSLHTIHY*SLFLYQAKVCEGICN 187
           G PCGIF    N   N  D    AFH S + F  +  S+  +       Y   +    C+
Sbjct: 124 GLPCGIFVTNRNGDANRVDNFTAAFHISNHIFDSSSASVSIVPQPLSLGYLLNILRKFCH 183

Query: 186 T 184
           T
Sbjct: 184 T 184


>SB_58993| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 541

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 110 ENIELCTKQRPI*FKF*LLCCVLGK 184
           +N   CTK RPI     + CC LGK
Sbjct: 135 DNENSCTKPRPIKMTKSVCCCTLGK 159


>SB_46333| Best HMM Match : EGF (HMM E-Value=1.10001e-40)
          Length = 580

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/52 (28%), Positives = 21/52 (40%)
 Frame = +3

Query: 123 CVPNKDLFNLNSDCCVAFWGKCCRYPHRPSPDIRKDFNSVSCATKRNFSKMN 278
           C+ +KD    N  C   F G  C    +P  D     N+ +C  K + S  N
Sbjct: 133 CINDKDNSGYNCTCSAGFTGSDCETQVKPC-DSSPCKNNATCTNKEDNSGYN 183


>SB_43767| Best HMM Match : DUF278 (HMM E-Value=3.9)
          Length = 453

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 514 GGESTLSGITGFFSGMMSTLAGVMFRSRNRQISIKG 621
           GGE TL G+     G+  T+ GV    R  +++I+G
Sbjct: 226 GGELTLRGVELTIRGVKLTIRGVELTLRGVELTIRG 261


>SB_31989| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1498

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = -3

Query: 460 VSPRFFINGSGSICNLLNNSSPYTLFISLSF----RASVWYFPLV 338
           VS  F+IN  GSI    ++   Y  +++ SF    +   WY P+V
Sbjct: 843 VSQAFYINAEGSIPGQSSDPKSYWSWVTTSFLPTLKPRYWYGPVV 887


>SB_25108| Best HMM Match : Cornifin (HMM E-Value=0.00015)
          Length = 858

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 33  SDFNFETNKSTSNKDFLTRNNTNKYVKTLNCVPNKD 140
           ++FN   N S ++K   +RNNTN ++K  +   +KD
Sbjct: 220 NNFNSYKNGSITSKATASRNNTNGHLKKRSVSRHKD 255


>SB_57080| Best HMM Match : EGF_CA (HMM E-Value=1.4013e-43)
          Length = 360

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
 Frame = +3

Query: 24  EPLSDFNFETNKSTSNKDFLTRNNTNKYVKTLNCVPNKDL--FNLNSDC 164
           + L  FNF+  +S   K       T++Y+   N   N     FN  SDC
Sbjct: 62  DSLLSFNFKKERSNDGKYLCEVLRTDRYINWKNYTDNAGYQHFNAKSDC 110


>SB_30622| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-14)
          Length = 856

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -3

Query: 391 TLFISLSFRASVWYFPLV*QFCLKYCGSCLMRISRLKK 278
           T  I +S    V + PL+ +    YC SC++++SRL+K
Sbjct: 391 TFSIEISKTKKV-HIPLLLECGHTYCDSCIIKLSRLQK 427


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,485,484
Number of Sequences: 59808
Number of extensions: 411742
Number of successful extensions: 1043
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)