Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021195
         (566 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2W5K6 Cluster: Putative uncharacterized protein; n=2; ...    34   2.0  

>UniRef50_A2W5K6 Cluster: Putative uncharacterized protein; n=2;
           Burkholderia cenocepacia PC184|Rep: Putative
           uncharacterized protein - Burkholderia cenocepacia PC184
          Length = 228

 Score = 34.3 bits (75), Expect = 2.0
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +3

Query: 360 PPSFRASQAAPRAQQWTSERDVEHVGGERVECHERDSAAHNTASLKSMAQR 512
           PP+ R+ + APR ++  ++ D +   G R  CHER + A   A+     +R
Sbjct: 20  PPNPRSGRPAPRDRRGRAQPDRDRAPGARRPCHERRAGARGPAAESRRGRR 70


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.312    0.128    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 375,705,102
Number of Sequences: 1657284
Number of extensions: 4777222
Number of successful extensions: 11647
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 11390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11643
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 38321472724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)