Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021195
         (566 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0080 + 17110136-17110388,17110851-17110921,17111604-171116...    29   2.0  
11_06_0768 + 27129007-27129038,27129140-27129220,27129723-271300...    28   4.5  
06_01_1175 - 10094144-10094387,10094573-10094730,10094851-100950...    28   6.0  
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198...    27   7.9  

>03_04_0080 +
           17110136-17110388,17110851-17110921,17111604-17111634,
           17111677-17111693
          Length = 123

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 274 SNRPQRRGVHRRVAAPARAFTTSPLTV 354
           + RP+R GV R V AP RA   +PL +
Sbjct: 27  ARRPRRSGVRRGVVAPGRAEAGAPLVL 53


>11_06_0768 +
           27129007-27129038,27129140-27129220,27129723-27130089,
           27130165-27130255,27130515-27130595,27130764-27131830,
           27132060-27132071,27132465-27133209,27133210-27135244,
           27135712-27135787,27135925-27136029,27137080-27137166
          Length = 1592

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +3

Query: 360 PPSFRASQAAPRAQQWTSERDVEHVGG-ERVECHERDSAAHNTASLKSMAQRPCTAP 527
           P S   SQ     + W  +    HV   ER+   ER + A N    K++A+ P  AP
Sbjct: 707 PKSTSQSQGNSAPKHWKIDNRQRHVESWERITI-ERSNIAENAEYAKNIAETPTDAP 762


>06_01_1175 -
           10094144-10094387,10094573-10094730,10094851-10095055,
           10095184-10095473,10095605-10095770,10095872-10095960,
           10096060-10096127,10097185-10097473
          Length = 502

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 432 VGGERVECHERDSAAHNTASLKSMAQRPCTAPVWTCTTR 548
           VGGE++ C    +AA  +     M +   T  +WTC  +
Sbjct: 9   VGGEKLRCAAAPAAAARSRMKLWMVRATTTVLLWTCVVQ 47


>06_03_0392 +
           20318728-20319309,20319596-20319725,20319844-20319895,
           20319995-20320061,20320547-20320633,20322526-20322567,
           20322635-20322740,20323155-20323219,20323299-20323343,
           20323442-20323549,20323636-20323723,20324147-20324193,
           20324355-20324363
          Length = 475

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 360 PPSFRASQAAPRAQQWTSE 416
           PP  R SQ  P+ QQWT E
Sbjct: 78  PPPPRRSQGPPQRQQWTRE 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.312    0.128    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,849,282
Number of Sequences: 37544
Number of extensions: 150190
Number of successful extensions: 420
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)