Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021195
         (566 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.38 
SB_28257| Best HMM Match : Gp-FAR-1 (HMM E-Value=3.2)                  30   1.1  

>SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1778

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +3

Query: 414  ERDVEHVGGERVE-CHE-RDSAAHNTASLKSMAQRPCTAPVWTCTTRTRDGVR 566
            +R ++HV    V+ CH  R++A   TA L  MA  P     W+C T  R+ VR
Sbjct: 1331 QRKLKHVESRTVQLCHAVRENA---TALLPEMAASPAQGNAWSCGTAGRNHVR 1380


>SB_28257| Best HMM Match : Gp-FAR-1 (HMM E-Value=3.2)
          Length = 497

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +3

Query: 447 VECHERDSAAHNTASLKSMAQRPCTAPVWTCTTRTRDGVR 566
           V CHERD  A +TA+L   AQRP    +       RD V+
Sbjct: 281 VHCHERDETAASTATLP--AQRPSRISLMISRHALRDKVK 318


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.312    0.128    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,902,524
Number of Sequences: 59808
Number of extensions: 156048
Number of successful extensions: 380
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)