Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021194
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    29   0.64 
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    27   3.4  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    26   4.5  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    26   4.5  
SPAC323.08 |||ribonuclease MRP complex subunit |Schizosaccharomy...    26   6.0  
SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos...    25   7.9  

>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +3

Query: 345 RDLQKLPPVH--FDHLDATKLLKDILVIQKEIQTIKESYVTEDKLNEIKNELYNL 503
           R   K PP+    DH + T  LKD  V+ K +QT +    T  ++  +K + ++L
Sbjct: 775 RKKDKKPPLFKAHDHWNNTSNLKDSAVLFKVLQTSRSMAFTCQEIENMKQKAFDL 829


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 142 SEDSLVRICSTSFSVEEIENAKSLLFESVTTSKRKRTREGKAECIAIF 285
           S+D  +R+ + S    E E      FESV ++K  R   GK +   +F
Sbjct: 213 SQDRYIRLWNISLWGSEDEKVSEEFFESVLSNKPVRFTLGKIDLKIVF 260


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/54 (24%), Positives = 30/54 (55%)
 Frame = +1

Query: 49  TKMTTRILKCSNCNIVICEVLAFIQNKIDVMSEDSLVRICSTSFSVEEIENAKS 210
           TK +T      NC+ ++C++ + +++    ++  SL      SFS+ ++E++ S
Sbjct: 46  TKASTSTPFVENCSNLLCDLASIVEDSPPTLTNTSL---SPHSFSLSDMESSMS 96


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +3

Query: 363 PPVHFDHLDATKLLKDILVIQKEIQTIKESYVTEDKLNEIKNELYNL 503
           P  H D L+A   L++ L  + E  T+  +  T+D LNE+  ++ +L
Sbjct: 447 PTNHLD-LEAVAWLEEYLTHEMEGHTLLITCHTQDTLNEVCTDIIHL 492


>SPAC323.08 |||ribonuclease MRP complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 211

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +1

Query: 142 SEDSLVRICSTSFSVEEIENAKSLLFESVTTSKRKRTREGKAECIAIF 285
           ++D  + + S+  +V +    KS    S    K+KR R+G+ E   IF
Sbjct: 163 NQDESLFLSSSPITVSQGTKRKSKNSNSTVKKKKKRARKGRDEIDDIF 210


>SPAC1783.04c |hst4||Sir2 family histone deacetylase
           Hst4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 540 CRSKLLFTKDAFSDYKAHFLFHLTYPPLHMI 448
           C  K LF    + D K+  +FH     LHM+
Sbjct: 95  CSGKELFDGSVYRDLKSVNIFHAMIRKLHML 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,614,815
Number of Sequences: 5004
Number of extensions: 50522
Number of successful extensions: 155
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)