Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021194
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0456 - 3461827-3462261,3462542-3462670,3462777-3462897,346... 30 1.5
07_01_0365 + 2718707-2718839,2719335-2719405,2719512-2719955,272... 30 2.0
06_03_1450 + 30246702-30247346,30248603-30248689,30248789-302489... 30 2.0
02_04_0319 - 22006550-22006952,22007260-22007441,22007522-220077... 30 2.0
11_04_0365 - 16818468-16818514,16818619-16821706,16822860-168229... 29 2.7
08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,893... 29 2.7
07_01_0998 - 8414492-8415175 29 3.5
09_04_0527 - 18337968-18338077,18338440-18341212 28 6.2
05_01_0262 + 2013396-2013572,2013921-2014712 28 8.2
04_04_1189 + 31586991-31587291,31587358-31587397,31587449-315875... 28 8.2
>07_01_0456 -
3461827-3462261,3462542-3462670,3462777-3462897,
3463004-3463086,3463087-3463124,3463219-3464153,
3464407-3464655,3464738-3465195,3465793-3465885,
3466402-3466650
Length = 929
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = -1
Query: 287 KKIAMHSAFPSRVLFRFEVVTDSNKRLLAFSISSTEKDVEHIRTKLSSLITSIL 126
KK M ++ P+ VL+ + TD + RL F I + + +EH+ +SL ++
Sbjct: 750 KKSLMQTSVPTAVLYDGSI-TDFDSRLYRFDIGTCLEVIEHVEEDQASLCGDVV 802
>07_01_0365 +
2718707-2718839,2719335-2719405,2719512-2719955,
2720660-2721802
Length = 596
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 145 EDSLVRICSTSFSVEEIENAKSLLFESVTTSKRKRTREGKAECIAIFL 288
E+ I +S EE+E K L ESV R+R+ K +A+ +
Sbjct: 219 EEEAEAILRKIYSAEEVEREKEELKESVEAEARERSSSEKTSLVALLM 266
>06_03_1450 +
30246702-30247346,30248603-30248689,30248789-30248920,
30249016-30249162,30250375-30250440,30250519-30250629,
30251551-30251584,30251667-30251743,30251829-30251906
Length = 458
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/98 (20%), Positives = 32/98 (32%)
Frame = +1
Query: 7 ECTHRCCCCLVTHRTKMTTRILKCSNCNIVICEVLAFIQNKIDVMSEDSLVRICSTSFSV 186
E +C C T R C NC + C+ + + ++ VR+C
Sbjct: 341 EAVTKCTAC--TADFSAFNRRHHCRNCGDIFCDKCTQGRTPLTTDADAQPVRVCDRCMDA 398
Query: 187 EEIENAKSLLFESVTTSKRKRTREGKAECIAIFLMLSV 300
+I S T +R RE + L + V
Sbjct: 399 MDINKKSSSASSRSTDGSSRRMREVACPTCTVHLQVQV 436
>02_04_0319 -
22006550-22006952,22007260-22007441,22007522-22007704,
22008144-22008242,22008999-22009115,22010476-22010739
Length = 415
Score = 29.9 bits (64), Expect = 2.0
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 6/102 (5%)
Frame = +1
Query: 37 VTHRT--KMTTRILKCSNCNIVICEVLAFIQNKIDVMSEDSLVRICSTSFSVEEIENAKS 210
+ HRT + T KC C+ + + F IDV SL C SF EI N +
Sbjct: 215 LVHRTFQGILTNETKCLMCDTITAKDETFFDLSIDVEQNSSLTS-CLKSFFSTEILNGED 273
Query: 211 LLFESVTTS---KRKRTREGKA-ECIAIFLMLSVFLKKLTRN 324
F +S KR + KA + I L ++++L+R+
Sbjct: 274 KFFCDKCSSLQEAHKRMKIKKAPHVLVIHLKRFKYVEQLSRH 315
>11_04_0365 -
16818468-16818514,16818619-16821706,16822860-16822919,
16823595-16823954
Length = 1184
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +3
Query: 378 DHLDATKLLKDILV-IQKEIQTIKESYVTEDKL-NEIKNELYNL 503
DH D+T L K I+V I KE + E +DKL EI+ + + L
Sbjct: 276 DHFDSTNLTKKIIVSITKESNNLSELVDLQDKLGQEIRGKRFLL 319
>08_01_0906 +
8933230-8933797,8933894-8934543,8937956-8938615,
8939751-8939817,8940421-8940724,8942993-8942996,
8944539-8946449
Length = 1387
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +1
Query: 37 VTHRTKMTTRIL--KCSNCNIVICEVLAFIQNKIDVMSEDSLVRICSTSFSVEEI 195
+ HR T IL KC VIC V + D+ ED+LV + + S++++
Sbjct: 775 IKHRNDETRHILLQKCGGLPKVICAVAESLSMVGDIKEEDNLVSKLAATRSLDDV 829
>07_01_0998 - 8414492-8415175
Length = 227
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 10 CTHRCCCCLVTHRTKMTTRILKCSNCNIVICEVL 111
C RCCC V++ T+ T I C+ C +++ V+
Sbjct: 17 CCDRCCCGCVSYDTRET--IFYCAVCLLLVAAVV 48
>09_04_0527 - 18337968-18338077,18338440-18341212
Length = 960
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +3
Query: 360 LPPVHFDHLDATKLLKDILVIQKEIQTIKESYVTEDKLNEIKN 488
L +H+ H+D+ L+DI V + + ++KE+Y T + ++N
Sbjct: 865 LANLHYLHIDSLMELRDIPVGIEFLSSVKEAYFTRMHSDFVRN 907
>05_01_0262 + 2013396-2013572,2013921-2014712
Length = 322
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Frame = +3
Query: 228 DDFKTKENTRREGRMHRD-----LFDVISLFKETDPELTPTFVARDLQKLPPVHFDHLDA 392
DD T GR H L++ TDP + P + A ++ PP D +D
Sbjct: 174 DDMVTLSGAHTIGRSHCSSFTARLYNFSGEAGRTDPAIDPAYAAELKRRCPPATDDQMDP 233
Query: 393 TKLLKD 410
T + D
Sbjct: 234 TTVPLD 239
>04_04_1189 +
31586991-31587291,31587358-31587397,31587449-31587534,
31587535-31588097,31588250-31589913,31589956-31590066,
31590152-31591181,31591234-31591406,31591535-31591814,
31592275-31592331
Length = 1434
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +3
Query: 345 RDLQKLPPVHFDHLDATKLLKDILVIQKEIQTIK--ESYVTEDKLNEIKNEL--YNLK 506
R QKL + F +TKLL L KE + ++ YV+ +N ++N L Y+L+
Sbjct: 595 RPFQKLRSLMFFGQSSTKLLNPTLTFCKEAKCLRLLRVYVSNAGINSLQNSLNPYHLR 652
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,355,669
Number of Sequences: 37544
Number of extensions: 298094
Number of successful extensions: 802
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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