Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021194
(698 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45176| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_45175| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_21400| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.29
SB_12743| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.51
SB_46784| Best HMM Match : LAGLIDADG_1 (HMM E-Value=4.5) 29 4.8
SB_25007| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29) 28 6.3
SB_1305| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.8e-11) 28 6.3
SB_11430| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_11749| Best HMM Match : UPF0254 (HMM E-Value=0.71) 28 8.4
>SB_45176| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 33.1 bits (72), Expect = 0.22
Identities = 17/36 (47%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Frame = +3
Query: 390 ATKLLKDILVIQKEIQTIKESYV-TEDKLNEIKNEL 494
A +L++D V+Q EIQTIKE + E+ L++I +EL
Sbjct: 111 AQRLIQDRAVMQSEIQTIKEKHAEAEEGLHKIMSEL 146
>SB_45175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 33.1 bits (72), Expect = 0.22
Identities = 17/36 (47%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Frame = +3
Query: 390 ATKLLKDILVIQKEIQTIKESYV-TEDKLNEIKNEL 494
A +L++D V+Q EIQTIKE + E+ L++I +EL
Sbjct: 166 AQRLIQDRAVMQSEIQTIKEKHAEAEEGLHKIMSEL 201
>SB_21400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1531
Score = 32.7 bits (71), Expect = 0.29
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Frame = +3
Query: 246 ENTRREGRMHRDLFDVISLFKETDPELTPTFVARDLQKLPPVHFDHLDATKLLKDILVIQ 425
+ T+R G + L K+ D ++ + +L KL D + K L+D+L
Sbjct: 900 QQTKRNGELEEKLRRTEEELKDRDGQVAK--LDNELTKLQNDFQDTITQLKTLEDLLDTS 957
Query: 426 KEIQTIKESYVTE-DK-LNEIKNELYNLKRHL 515
K + KE VTE DK LNE +EL + L
Sbjct: 958 KRVVEEKEQKVTELDKLLNESVDELQQKDKSL 989
>SB_12743| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 922
Score = 31.9 bits (69), Expect = 0.51
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -3
Query: 192 FFHGERR*TY--THQTVFTHHIYFILYESKHFTNH 94
+F G R +Y TH F HH+Y L+ K+F H
Sbjct: 81 YFQGRGRHSYAYTHSVQFGHHVYLNLHTLKNFIKH 115
>SB_46784| Best HMM Match : LAGLIDADG_1 (HMM E-Value=4.5)
Length = 192
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +3
Query: 318 PELTPTF--VARDLQKLPPVHFDHLDATKLLKDILVIQKEIQTIKESYVTEDKLNEIKNE 491
P P+F R +KLPP H ++L K L+D +++K Q E + +K +
Sbjct: 45 PYKRPSFSLAGRPTKKLPPTHGENLMYVK-LEDEAIVEK-FQVYLELNEQTSSVESVKEK 102
Query: 492 LYNLKRH 512
L RH
Sbjct: 103 LQEQLRH 109
>SB_25007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 146
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +3
Query: 318 PELTPTF--VARDLQKLPPVHFDHLDATKLLKDILVIQKEIQTIKESYVTEDKLNEIKNE 491
P P+F R +KLPP H ++L K L+D +++K Q E + +K +
Sbjct: 45 PYKRPSFSLAGRPTKKLPPTHGENLMYVK-LEDEAIVEK-FQVYLELNEQTSSVESVKEK 102
Query: 492 LYNLKRH 512
L RH
Sbjct: 103 LQEQLRH 109
>SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)
Length = 2072
Score = 28.3 bits (60), Expect = 6.3
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Frame = -1
Query: 401 KLSRVEMIKMYRR*LLQISSHKS--WS*FRVSFFKKTDNIKKIAMHSAFPSRVLFRFEVV 228
K S +E K Y+ + Q+ W R S F K N K+ + + + + +
Sbjct: 472 KCSSIE--KEYQTTIAQLREEMKLKWKSERKSLFNKNKN--KVKQYEENITELEMKVSRL 527
Query: 227 TDSNKRLLAFSISSTEKDVEHIRTKLSSLI 138
+ N R ++S++ K +EH +TK SSL+
Sbjct: 528 STENARFQE-NLSASTKQIEHWKTKHSSLL 556
>SB_1305| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.8e-11)
Length = 1491
Score = 28.3 bits (60), Expect = 6.3
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +3
Query: 246 ENTRREGRMHRDLFDVISLFKETDPELTPTFVAR-DLQKLPPVHFDHLDATKLLKDILVI 422
E+ +G++ +DL D + KE ++ R +L+K D LD ++ L
Sbjct: 538 ESESMKGKI-KDLEDEVRYLKERLEDMAKEKTRRRELEKKIEELQDELDDVSTRRNELQ- 595
Query: 423 QKEIQTIKESYVTEDKLNEIKNE 491
+K+ + IKE+ D++NE+K E
Sbjct: 596 KKQEKIIKENDELNDRINELKKE 618
>SB_11430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 474
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 231 RHRFKQKAFSIFNFFHGERR*TYTHQTVFTHHIYFILYE 115
+H F AF++F GE + Y T F H + +LYE
Sbjct: 89 KHAF-DPAFNLFKVTTGEEQRLYPSPTSFIHDNHLLLYE 126
>SB_11749| Best HMM Match : UPF0254 (HMM E-Value=0.71)
Length = 405
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 129 FILYESKHFTNHDVAITTF*NAGRHLC 49
++L+ H+T H++AI T G LC
Sbjct: 92 WLLFRGMHYTEHNIAIFTLGTRGFELC 118
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,696,855
Number of Sequences: 59808
Number of extensions: 376681
Number of successful extensions: 1092
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -