Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021194
         (698 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578796-1|AAT07301.1|  437|Anopheles gambiae Gbb-60A protein.         27   0.43 
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    26   0.99 
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            23   9.2  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            23   9.2  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    23   9.2  

>AY578796-1|AAT07301.1|  437|Anopheles gambiae Gbb-60A protein.
          Length = 437

 Score = 27.5 bits (58), Expect = 0.43
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 390 ATKLLKDILVIQKEIQTIKESYVTEDKLNEIKNELYNL 503
           AT  L  I V     QT+ E  +T ++  EI+NE+ NL
Sbjct: 31  ATSTLSGIYVDNGVGQTVLEDTLTYEEQQEIENEILNL 68


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 26.2 bits (55), Expect = 0.99
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -1

Query: 305 KKTDNIKKIAMHSAFPSRVLFRFEVVTDSNK-RLLAFSISSTEKDVEHIRTKLSSL 141
           K+  +  K A+  A     + + + VT+  K   L +S   TEKD+E  R +L +L
Sbjct: 477 KRAVDESKSALSIAESELKICQHDEVTERRKLESLRYSYEETEKDLEEKRARLQTL 532


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = -1

Query: 224 DSNKRLLAFSISSTEK 177
           DSN++++ FS +STE+
Sbjct: 505 DSNEQIITFSTASTEQ 520


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = -1

Query: 224 DSNKRLLAFSISSTEK 177
           DSN++++ FS +STE+
Sbjct: 506 DSNEQIITFSTASTEQ 521


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +1

Query: 202 AKSLLFESVTTSKRKRTRE 258
           AKSLL +++ TSKR++ +E
Sbjct: 403 AKSLLEKAIRTSKRQQFQE 421


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 658,391
Number of Sequences: 2352
Number of extensions: 12552
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71086350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)