Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021194
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    24   1.6  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   4.9  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   4.9  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   8.5  

>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 342 ARDLQKLPPVHFDHLDATKLLKDILVIQKE--IQTI 443
           A DL   PP+H D  +  K ++ IL+   +  IQTI
Sbjct: 242 AIDLDIGPPLHADQAEEYKKIQQILIRMNKLCIQTI 277


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 260 PSRVLFRFEVVTDSNKRL 207
           P++V  RFE + D NK L
Sbjct: 185 PAKVKLRFENLFDGNKEL 202


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/46 (17%), Positives = 23/46 (50%)
 Frame = +3

Query: 369 VHFDHLDATKLLKDILVIQKEIQTIKESYVTEDKLNEIKNELYNLK 506
           +H+ H   T +      ++++ +   ++   EDKL+ + ++ +  K
Sbjct: 6   IHYQHYHITPVFTKQKKVKEDTELNLQTIFNEDKLDNLMDKQFKNK 51


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = -2

Query: 106 LHKSRCCNYYILKCGSSSLCDESLDNNN 23
           +  +RC  Y+    G+ +  +++ DN N
Sbjct: 414 MRNTRCGRYHNQNAGNQNADNQNADNQN 441


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,426
Number of Sequences: 438
Number of extensions: 3696
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)