Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021194
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g30580.1 68415.m03726 zinc finger (C3HC4-type RING finger) fa...    31   0.97 
At5g07650.1 68418.m00876 formin homology 2 domain-containing pro...    28   6.8  
At3g51860.1 68416.m05687 cation exchanger, putative (CAX3) simil...    28   6.8  
At4g24610.1 68417.m03525 expressed protein                             27   9.0  
At3g05130.1 68416.m00557 expressed protein ; expression supporte...    27   9.0  

>At2g30580.1 68415.m03726 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 420

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 19/82 (23%), Positives = 37/82 (45%)
 Frame = +1

Query: 70  LKCSNCNIVICEVLAFIQNKIDVMSEDSLVRICSTSFSVEEIENAKSLLFESVTTSKRKR 249
           L+  + NI +  +  ++  K+D+ SED +   C     +  ++    +     TTSK +R
Sbjct: 334 LRIRDGNIPVSFIQKYLMRKLDLKSEDEVEITCMGEPVIPTLQLHSLVDLWLETTSKHQR 393

Query: 250 TREGKAECIAIFLMLSVFLKKL 315
                      F+M+ V+ +KL
Sbjct: 394 VAASIGSSAKEFVMVLVYSRKL 415


>At5g07650.1 68418.m00876 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02128
          Length = 815

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/70 (25%), Positives = 34/70 (48%)
 Frame = +1

Query: 94  VICEVLAFIQNKIDVMSEDSLVRICSTSFSVEEIENAKSLLFESVTTSKRKRTREGKAEC 273
           ++  VL   +  +DV   ++L+R C T    EE+E  K+   +  T  K ++  + KA  
Sbjct: 492 MMAAVLGMDEYVLDVDQIENLIRFCPTK---EEMELLKNYTGDKATLGKCEQLAKAKAPL 548

Query: 274 IAIFLMLSVF 303
              F +++ F
Sbjct: 549 KEHFRVINAF 558


>At3g51860.1 68416.m05687 cation exchanger, putative (CAX3) similar
           to high affinity calcium antiporter CAX1 [Arabidopsis
           thaliana] gi|9256741|gb|AAB05913; Ca2+:Cation Antiporter
           (CaCA) Family member PMID:11500563; non-consensus
           AT-acceptor splice site at intron 1
          Length = 459

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 20/73 (27%), Positives = 31/73 (42%)
 Frame = +1

Query: 76  CSNCNIVICEVLAFIQNKIDVMSEDSLVRICSTSFSVEEIENAKSLLFESVTTSKRKRTR 255
           C N   +I  +LA   NK+ V+    L  I S    V       SL F  +   +R++  
Sbjct: 136 CGNATELIIAILALANNKVAVVKYSLLGSILSNLLLV----LGTSLFFGGIANIRREQRF 191

Query: 256 EGKAECIAIFLML 294
           + K   +  FL+L
Sbjct: 192 DRKQADVNFFLLL 204


>At4g24610.1 68417.m03525 expressed protein 
          Length = 1145

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 21/65 (32%), Positives = 31/65 (47%)
 Frame = +3

Query: 384  LDATKLLKDILVIQKEIQTIKESYVTEDKLNEIKNELYNLKRHL**IITSIYITPKSH*Y 563
            L  T +LK IL   KE  ++ ES +   K+N +K +L N   HL  +  +      S  Y
Sbjct: 1009 LQKTTMLKKILQDSKE--SVGESDI-RSKMNNLKEQLTNTVNHLHSVCETHVFIALSRGY 1065

Query: 564  KERRG 578
             +R G
Sbjct: 1066 WDRMG 1070


>At3g05130.1 68416.m00557 expressed protein ; expression supported
           by MPSS
          Length = 634

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/41 (34%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = +3

Query: 396 KLLKDILVIQKEIQTIKESYVTEDKL-NEIKNELYNLKRHL 515
           +L+K+  V ++EI+ +K+  +  +K+  E KNE+  LKR +
Sbjct: 219 RLVKERKVREEEIEGVKKEKIGLEKIMEEKKNEIDGLKREI 259


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,477,664
Number of Sequences: 28952
Number of extensions: 256490
Number of successful extensions: 837
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)