Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021193
         (767 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1073 - 33895608-33895880,33896133-33896180,33896273-338965...    30   1.8  
02_03_0390 + 18448671-18448889,18449567-18449632,18449702-184497...    30   2.3  
11_02_0071 - 8009785-8010012,8010456-8010974,8011429-8011611           29   3.1  
12_01_0977 - 9900073-9900521,9900594-9900698,9900770-9900959,990...    29   5.4  
07_03_0631 + 20104332-20106802,20106904-20107030,20107352-201074...    28   7.1  
02_05_0678 - 30814192-30814310,30814636-30814660,30814948-308150...    28   7.1  
08_01_0404 - 3590296-3590409,3590529-3590819,3592414-3592461,359...    28   9.4  

>02_05_1073 -
           33895608-33895880,33896133-33896180,33896273-33896509,
           33897233-33897269,33898603-33898913
          Length = 301

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = -1

Query: 386 LHIAIVQGIRVVFSVGITILFEILR 312
           LH AI+ GIRV++ V +T+ F+I +
Sbjct: 171 LHSAILSGIRVLYPVKVTLWFDIFK 195


>02_03_0390 + 18448671-18448889,18449567-18449632,18449702-18449761,
            18449864-18449959,18452287-18452447,18452669-18452790,
            18452872-18453239,18453653-18453739,18453835-18453969,
            18454349-18454471,18454771-18454854,18455023-18455187,
            18455310-18455486,18455660-18455773,18455912-18456016,
            18457056-18457174,18457244-18457385,18457461-18457555,
            18457757-18457862,18458125-18458204,18458285-18458461,
            18459828-18459912,18460024-18460104,18460208-18460351,
            18460468-18460563,18460654-18460854,18461462-18461895,
            18462417-18462478,18462622-18462872,18462956-18463030,
            18463110-18463300,18463696-18463867,18463956-18464020,
            18464646-18464778,18464861-18464962,18465047-18465130,
            18465656-18465730,18465818-18465877,18465967-18466223,
            18466560-18466608,18466781-18466941,18467013-18467079,
            18467174-18467299,18467422-18467592,18468566-18468769,
            18469059-18469165,18469608-18469737,18469774-18469959,
            18470704-18470742
          Length = 2202

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +3

Query: 81   LTRNNTNKYVKTLNCVPNKDLFNLNSDCCVAF 176
            + RNNTN   +TLN   NK L+  +S+C + F
Sbjct: 952  VARNNTNDQYQTLNDPVNK-LYTTHSECSIEF 982


>11_02_0071 - 8009785-8010012,8010456-8010974,8011429-8011611
          Length = 309

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -1

Query: 755 GITCQCYCHPFYCQIKSVTVFGVFVRDIKNVFVVTFGILPGLWQCP 618
           G+  + +  PF  ++  V    V +RD++N  VV     PG   CP
Sbjct: 187 GLRIKTWGKPFAGRVSGVRFANVAMRDVQNPIVVDQNYCPGNVNCP 232


>12_01_0977 -
           9900073-9900521,9900594-9900698,9900770-9900959,
           9901035-9901093,9901297-9901688,9901770-9902059,
           9902146-9903030
          Length = 789

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
 Frame = +3

Query: 366 LNDSDMKSVYGEELFNKLHILPDPLMKN------LGDTLAMNMTEVKKSRVK 503
           LN+S   ++   E+F+KL + PD   KN      +G ++A+ MT+    R++
Sbjct: 680 LNNSGPSALDATEIFDKLRVAPDVYFKNIKKAGSMGASMALAMTKSLYPRIE 731


>07_03_0631 +
           20104332-20106802,20106904-20107030,20107352-20107479,
           20108771-20109083
          Length = 1012

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +3

Query: 348 KYHTDALNDSDMKSVYGEELFNKLHILPDPLMKNLGDTLAMNMTEVKKSRVKRINWW 518
           K+H   L   D     G+++  KLH LP    + +G  L   + E     V   NWW
Sbjct: 323 KHHAFGLTRKDSLESIGDKIAGKLHGLP-LSAEVIGRLLRTKLDEDHWRNVCESNWW 378


>02_05_0678 -
           30814192-30814310,30814636-30814660,30814948-30815039,
           30815119-30815170
          Length = 95

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/37 (43%), Positives = 17/37 (45%)
 Frame = -3

Query: 288 GSKNSFSRNFFSLHTIHY*SLFLYQAKVCEGICNTFP 178
           GSK+ FS N   L    Y   F   A   EGIC  FP
Sbjct: 2   GSKDGFSNNKL-LDDFGYNPTFKDDATAAEGICTVFP 37


>08_01_0404 -
           3590296-3590409,3590529-3590819,3592414-3592461,
           3592559-3592795,3593668-3593704,3594311-3594627
          Length = 347

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 386 LHIAIVQGIRVVFSVGITILFEILRIV 306
           LH AI+ G+RVV  V  T  F+I + V
Sbjct: 173 LHSAILSGLRVVCHVNFTFCFDIYKNV 199


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,544,685
Number of Sequences: 37544
Number of extensions: 407275
Number of successful extensions: 948
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)