Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021193
         (767 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7325| Best HMM Match : SNF2_N (HMM E-Value=8.9e-32)                 32   0.59 
SB_15137| Best HMM Match : SRCR (HMM E-Value=4.9e-28)                  30   1.8  
SB_51947| Best HMM Match : 7tm_1 (HMM E-Value=1.4013e-45)              29   4.1  
SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17)                    29   5.5  
SB_49478| Best HMM Match : Scramblase (HMM E-Value=0.0015)             28   7.2  
SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13)                   28   7.2  
SB_30916| Best HMM Match : C2 (HMM E-Value=1.2e-17)                    28   7.2  
SB_53636| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_46027| Best HMM Match : Fibrinogen_C (HMM E-Value=0.24)             28   9.5  
SB_22215| Best HMM Match : Rib_hydrolayse (HMM E-Value=0.035)          28   9.5  

>SB_7325| Best HMM Match : SNF2_N (HMM E-Value=8.9e-32)
          Length = 884

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
 Frame = -1

Query: 323 EILRIVSDAHFTAQKIHF-REISFRCTRYTIKVFSYIRRRS--VRVSATLSP 177
           ++L +V    F A  I F +E++FRC+++    FS+IR+ S  ++ SA L P
Sbjct: 28  KVLVVVWKPKFAAPTIVFVKEMAFRCSKFFASRFSHIRKSSKDIKRSAFLLP 79


>SB_15137| Best HMM Match : SRCR (HMM E-Value=4.9e-28)
          Length = 327

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 15  VTMEPLSDFNFETNKSTSNKDFLTRNNTNKYVKTLNCVPNKDLFNLNSD 161
           + M+  ++ N   N STSN +  TRNN N    + N   N +    NS+
Sbjct: 114 IGMQSNNNNNSNNNNSTSNSNSSTRNNNNSTSNSNNSTRNNNNSTSNSN 162


>SB_51947| Best HMM Match : 7tm_1 (HMM E-Value=1.4013e-45)
          Length = 609

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/26 (42%), Positives = 20/26 (76%)
 Frame = +2

Query: 470 EYDRSEKVKSQENKLVANRLYRVLLG 547
           E +R+EK++++  K++ NR+ R LLG
Sbjct: 498 EAERAEKMRNKRRKILENRVTRTLLG 523


>SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17)
          Length = 1860

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = +3

Query: 288  REMRIR----HDPQYFKQNCYTNGKYHTDALNDSDMKSVYGEELFNKLHILPD 434
            RE R+R    H PQ FK+ C      H       D  +++  ++ N L  LPD
Sbjct: 914  REARVRLPKAHQPQLFKEYCPQVQAIHNYTPQQPDELALHEGDVINVLRKLPD 966


>SB_49478| Best HMM Match : Scramblase (HMM E-Value=0.0015)
          Length = 334

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 734 CHPFYCQIKSVTVFGVFVRDIKNVFVVT 651
           CHP  C I SV  F VF+  +  V  VT
Sbjct: 267 CHPCECTIDSVASFQVFISGLPVVIDVT 294


>SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13)
          Length = 3035

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = +1

Query: 532  SGITGFFSGMMSTLAGVMFRSRNRQISIQGHCHKPGRIPKVTTKT 666
            S I  F   + S+ AG+ F       SI   CH P   P V + T
Sbjct: 998  SSIASFIQNVFSS-AGIAFDQAKDSTSIFHSCHNPDSCPNVISST 1041


>SB_30916| Best HMM Match : C2 (HMM E-Value=1.2e-17)
          Length = 809

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +3

Query: 342 NGKYHTDALNDSDMKSVYGEELFNKLHILPDPLMKNLGDTLAMNMTEVKKSRVKRI--NW 515
           NG +  D  +DSD     GE+ +  + I P+P      DT A   T   + ++ RI    
Sbjct: 512 NGGHDNDVNDDSDDDDDGGEKHWEVISI-PEPRAYRFTDTKATQFTRYTRYKLCRIYPAG 570

Query: 516 WRIDS 530
           +RIDS
Sbjct: 571 YRIDS 575


>SB_53636| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +1

Query: 643 IPKVTTKTFLISRTKTPNTVTD 708
           IPK+ T +FL+ R++TP+ V +
Sbjct: 28  IPKIPTSSFLLRRSRTPSPVRE 49


>SB_46027| Best HMM Match : Fibrinogen_C (HMM E-Value=0.24)
          Length = 901

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 273 MNFLSREMRIRHDPQYFKQNCYTNGKYHTDALNDSDMK-SVYGEELFNKL 419
           M    RE   +++  Y+K +   N +   D L++SDMK   Y +  F KL
Sbjct: 424 MKIDGREKTFKYESSYWKNHNVYNTESIADGLDNSDMKLHTYSKLPFEKL 473


>SB_22215| Best HMM Match : Rib_hydrolayse (HMM E-Value=0.035)
          Length = 186

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/61 (29%), Positives = 24/61 (39%)
 Frame = -3

Query: 366 GHPCGIFRWYNNFV*NTADRV*CAFHGSKNSFSRNFFSLHTIHY*SLFLYQAKVCEGICN 187
           G PCGIF    N   N  D    AFH S + F  +  S+  +       Y   +    C+
Sbjct: 124 GLPCGIFVTNRNGDANRVDNFTAAFHISNHIFDSSSASVSIVPQPLSLGYLLNILRKFCH 183

Query: 186 T 184
           T
Sbjct: 184 T 184


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,112,226
Number of Sequences: 59808
Number of extensions: 531656
Number of successful extensions: 1343
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1326
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)