Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021193
         (767 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09587-1|AAA57001.1|  685|Homo sapiens glycyl-tRNA synthetase pr...    31   3.4  
U09510-1|AAA86443.1|  685|Homo sapiens glycyl-tRNA synthetase pr...    31   3.4  
D30658-1|BAA06338.1|  739|Homo sapiens glycyl tRNA synthetase pr...    31   3.4  
BC007755-1|AAH07755.1|  739|Homo sapiens glycyl-tRNA synthetase ...    31   3.4  
BC007722-1|AAH07722.1|  739|Homo sapiens glycyl-tRNA synthetase ...    31   3.4  

>U09587-1|AAA57001.1|  685|Homo sapiens glycyl-tRNA synthetase
           protein.
          Length = 685

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 3/80 (3%)
 Frame = +3

Query: 228 DFNSVSCATKRNFS---KMNFLSREMRIRHDPQYFKQNCYTNGKYHTDALNDSDMKSVYG 398
           DF  V CA K N     + +F+  E  +  D              H D   D  +K V  
Sbjct: 95  DFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVKDVKN 154

Query: 399 EELFNKLHILPDPLMKNLGD 458
            E F   H+L   L K + D
Sbjct: 155 GECFRADHLLKAHLQKLMSD 174


>U09510-1|AAA86443.1|  685|Homo sapiens glycyl-tRNA synthetase
           protein.
          Length = 685

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 3/80 (3%)
 Frame = +3

Query: 228 DFNSVSCATKRNFS---KMNFLSREMRIRHDPQYFKQNCYTNGKYHTDALNDSDMKSVYG 398
           DF  V CA K N     + +F+  E  +  D              H D   D  +K V  
Sbjct: 95  DFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVKDVKN 154

Query: 399 EELFNKLHILPDPLMKNLGD 458
            E F   H+L   L K + D
Sbjct: 155 GECFRADHLLKAHLQKLMSD 174


>D30658-1|BAA06338.1|  739|Homo sapiens glycyl tRNA synthetase
           protein.
          Length = 739

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 3/80 (3%)
 Frame = +3

Query: 228 DFNSVSCATKRNFS---KMNFLSREMRIRHDPQYFKQNCYTNGKYHTDALNDSDMKSVYG 398
           DF  V CA K N     + +F+  E  +  D              H D   D  +K V  
Sbjct: 149 DFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVKDVKN 208

Query: 399 EELFNKLHILPDPLMKNLGD 458
            E F   H+L   L K + D
Sbjct: 209 GECFRADHLLKAHLQKLMSD 228


>BC007755-1|AAH07755.1|  739|Homo sapiens glycyl-tRNA synthetase
           protein.
          Length = 739

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 3/80 (3%)
 Frame = +3

Query: 228 DFNSVSCATKRNFS---KMNFLSREMRIRHDPQYFKQNCYTNGKYHTDALNDSDMKSVYG 398
           DF  V CA K N     + +F+  E  +  D              H D   D  +K V  
Sbjct: 149 DFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVKDVKN 208

Query: 399 EELFNKLHILPDPLMKNLGD 458
            E F   H+L   L K + D
Sbjct: 209 GECFRADHLLKAHLQKLMSD 228


>BC007722-1|AAH07722.1|  739|Homo sapiens glycyl-tRNA synthetase
           protein.
          Length = 739

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 3/80 (3%)
 Frame = +3

Query: 228 DFNSVSCATKRNFS---KMNFLSREMRIRHDPQYFKQNCYTNGKYHTDALNDSDMKSVYG 398
           DF  V CA K N     + +F+  E  +  D              H D   D  +K V  
Sbjct: 149 DFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVKDVKN 208

Query: 399 EELFNKLHILPDPLMKNLGD 458
            E F   H+L   L K + D
Sbjct: 209 GECFRADHLLKAHLQKLMSD 228


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,922,474
Number of Sequences: 237096
Number of extensions: 2457387
Number of successful extensions: 9146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9145
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9255747988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)