Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021193
         (767 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82278-3|CAB05255.1|  347|Caenorhabditis elegans Hypothetical pr...    31   0.90 
Z49967-2|CAA90248.2|  450|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AC006630-7|AAK68329.1|   99|Caenorhabditis elegans Hypothetical ...    29   4.8  
Z98877-1|CAB11569.2|  343|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AC024765-1|AAF60529.2|  300|Caenorhabditis elegans Prion-like-(q...    28   8.4  

>Z82278-3|CAB05255.1|  347|Caenorhabditis elegans Hypothetical
           protein M162.3 protein.
          Length = 347

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 20/70 (28%), Positives = 36/70 (51%)
 Frame = -2

Query: 469 MANVSPRFFINGSGSICNLLNNSSPYTLFISLSFRASVWYFPLV*QFCLKYCGSCLMRIS 290
           +A V+P  +I   G IC   N++SP  +++SL+      +  +V +  L    + +  IS
Sbjct: 261 LAIVTPAEWILAFGQICWTCNHASPAIIYVSLNSTIRREFLKIVFRNTLAPV-NLIFGIS 319

Query: 289 RLKKFIFEKF 260
            LK  +F K+
Sbjct: 320 ELKSLVFRKW 329


>Z49967-2|CAA90248.2|  450|Caenorhabditis elegans Hypothetical
           protein F54C9.2 protein.
          Length = 450

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +3

Query: 258 RNFSKMN--FLSREMRIRHDPQYFKQNCYTNGKYHTDALNDSDMKSVYGEELFNK-LHIL 428
           RNF K N  FLS + R       FK N  + GK   +   DS  K+VY EE+ +  +  L
Sbjct: 108 RNFEKNNKDFLSDQKRYP-----FKINLDSEGKAFFEIPLDSGTKNVYPEEIGSLIIGYL 162

Query: 429 PDPLMKNLGDTL 464
                K+LG TL
Sbjct: 163 KSAAAKHLGVTL 174


>AC006630-7|AAK68329.1|   99|Caenorhabditis elegans Hypothetical
           protein F14H12.7 protein.
          Length = 99

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 23/81 (28%), Positives = 35/81 (43%)
 Frame = -1

Query: 398 TVHTLHIAIVQGIRVVFSVGITILFEILRIVSDAHFTAQKIHFREISFRCTRYTIKVFSY 219
           T +T  +A V+ + V+  V I  L   + IVSD HF  +      +S       I+   Y
Sbjct: 10  TDNTNQVAQVESMYVLLGVVIFFLVLYILIVSDRHFRRRMSWLDSLSVTPRNPRIE---Y 66

Query: 218 IRRRSVRVSATLSPKRNTTIR 156
             R   R +    PK+ T +R
Sbjct: 67  ANRAHRRDNVQAEPKKPTIVR 87


>Z98877-1|CAB11569.2|  343|Caenorhabditis elegans Hypothetical
           protein Y69H2.1 protein.
          Length = 343

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 21/80 (26%), Positives = 38/80 (47%)
 Frame = -2

Query: 403 SSPYTLFISLSFRASVWYFPLV*QFCLKYCGSCLMRISRLKKFIFEKFLFVAHDTLLKSF 224
           +SP    IS+SF  ++  F ++  F L       + +  + KF+F+K     H +L  SF
Sbjct: 197 ASPDVFLISMSFNNTLLIFAILANFTL-------VIVQVIDKFLFKKCTSTKHLSLNYSF 249

Query: 223 LISGEGL*GYLQHFPQNATQ 164
           +I  + +  ++  FP    Q
Sbjct: 250 VILLQSVTEFILSFPLTMRQ 269


>AC024765-1|AAF60529.2|  300|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 82
           protein.
          Length = 300

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/61 (24%), Positives = 27/61 (44%)
 Frame = +3

Query: 255 KRNFSKMNFLSREMRIRHDPQYFKQNCYTNGKYHTDALNDSDMKSVYGEELFNKLHILPD 434
           +RN      +S+++ + H PQ  +  C         A N ++  ++   E+ NK  IL  
Sbjct: 9   RRNVYMQRQMSQQVVVAHHPQPLQNYCQQLQNQLVQAQNQANSANMTLREVLNKPSILQQ 68

Query: 435 P 437
           P
Sbjct: 69  P 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,065,572
Number of Sequences: 27780
Number of extensions: 409801
Number of successful extensions: 1175
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)