Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021192
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    29   0.47 
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    27   3.3  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    25   7.7  

>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -1

Query: 241 VPNREEASERSPSPRTVVPKMAHRHQPSEKYCGAISEGKLHTDFLPD 101
           +P REE S + P  +  V      + PS+K  G IS  K++  F  D
Sbjct: 105 LPEREEHSSQLPPAQNQVLPFQSLNAPSKKLRGRISLSKIYQFFFDD 151


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = -1

Query: 415 IESREPAPPHDLSQLESRKALSSHPSYLAYSSTIFPGRRRPI*LYSPTTRLFT 257
           + +  PAPP+  +        SS PS    +S  FP       L+SPT R  T
Sbjct: 233 LSTSTPAPPNS-NNANPSTLFSSIPSSRHTTSNHFPSNSAQSSLFSPTARPLT 284


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -1

Query: 394 PPHDLSQLESRKALSSHPSYLAYSSTIFPGRRRPI*LYSPT 272
           PPH+ SQ +S    +  PS+ +      P   +P  +  PT
Sbjct: 508 PPHNYSQAQSPNLATPSPSFSSLPDVSLPPIVKPNLMSEPT 548


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,893,681
Number of Sequences: 5004
Number of extensions: 60039
Number of successful extensions: 151
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)