Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021192
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0015 + 181155-181323,182074-182195,182425-182449,182664-18...    33   0.21 
02_02_0289 - 8606357-8607277                                           30   1.5  
01_06_0734 + 31569017-31569358,31569832-31569906,31570009-315701...    30   2.0  
03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171     28   6.0  
02_05_1314 - 35661824-35661912,35662031-35662454,35662689-356627...    28   6.0  

>06_01_0015 +
           181155-181323,182074-182195,182425-182449,182664-182828,
           183203-183321
          Length = 199

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -3

Query: 560 IHGSSLLRRRKSVRQSLDNGLIFKLFNMGVPDSLVL 453
           + G  L RRR+S R S   G+   LF +G P++LV+
Sbjct: 47  VSGRHLRRRRQSKRTSRGTGVYASLFGVGAPEALVI 82


>02_02_0289 - 8606357-8607277
          Length = 306

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -3

Query: 533 RKSVRQSLDNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSS 390
           R+ +R   DNG+    F    P   +L ++D+L N++    VEGT SS
Sbjct: 213 RRVIRVFKDNGMFSDEFK--TPYGYILDVKDYLYNKTLYDTVEGTISS 258


>01_06_0734 +
           31569017-31569358,31569832-31569906,31570009-31570159,
           31570716-31570784,31570864-31571036,31571474-31571611,
           31571747-31571872,31571951-31572049,31573175-31573298,
           31573465-31573528,31573798-31573852,31573951-31574075,
           31574228-31574301,31574436-31574485,31574722-31574808,
           31574897-31574947,31575025-31575108,31575400-31575498
          Length = 661

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 21/50 (42%), Positives = 30/50 (60%)
 Frame = -2

Query: 447 TGLLVEPLFSISSRGNPLLPTTSHSWSPARLCPLTPPI*LIRQRYSPVAA 298
           TG+L+  L S +SR +P+ PT++   SPA   P   P  L+R+ YS  AA
Sbjct: 3   TGMLLRGLRSAASRTSPVFPTSAS--SPA---PYVSP--LLRRLYSAAAA 45


>03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171
          Length = 1054

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -1

Query: 400 PAPPHDLSQLESRKALSSHPSYLAYSSTIFPGRRRPI*LYSP 275
           P P  + +++  +K +  +PS L+ S   F GR+    LYSP
Sbjct: 240 PRPSKETARMIKKKLVEENPSVLSGSQPAFDGRKN---LYSP 278


>02_05_1314 -
           35661824-35661912,35662031-35662454,35662689-35662787,
           35662886-35662995,35663263-35663516,35664080-35664098,
           35664834-35665075,35665662-35666401
          Length = 658

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -1

Query: 550 ALFFDVAKAFDKVWTM 503
           ALFF V  AFDK+WT+
Sbjct: 122 ALFFFVGAAFDKLWTL 137


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,142,683
Number of Sequences: 37544
Number of extensions: 448967
Number of successful extensions: 1317
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1317
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)