Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021192
(685 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 62 5e-10
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 62 5e-10
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 61 1e-09
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 55 8e-08
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 52 6e-07
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 52 6e-07
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 49 5e-06
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 49 5e-06
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 49 5e-06
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 49 5e-06
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 49 5e-06
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 49 5e-06
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 49 5e-06
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 49 7e-06
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 49 7e-06
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 48 1e-05
AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p pro... 47 2e-05
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 44 3e-04
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 41 0.001
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 41 0.001
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 41 0.001
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 41 0.001
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 36 0.052
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 31 1.5
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 62.5 bits (145), Expect = 5e-10
Identities = 32/83 (38%), Positives = 49/83 (59%)
Frame = -3
Query: 506 NGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGXXXXXXXXXX 327
+GL+ KL +G P L+ I+++FL++R F + ++S+ R L AGVPQG
Sbjct: 620 DGLLHKLKMIGTPIYLIKIVQNFLTHRYFSVNLNSSQSARRILNAGVPQGSVLGPTLFNI 679
Query: 326 XVNDIPRSPPTHLALFADDTTVY 258
+DIP++ L+LFADD VY
Sbjct: 680 FTHDIPQATNCVLSLFADDAAVY 702
Score = 38.3 bits (85), Expect = 0.010
Identities = 21/80 (26%), Positives = 35/80 (43%)
Frame = -2
Query: 240 SLIAKKLQSAALALGQWFRKWRIDINPAKSTAVLFQXXXXXXXXXXXXXRNLTPPITLFR 61
S I + +QS L +++KW+I INP K+ A+ F + +
Sbjct: 709 SEINQSMQSYLNELDIYYKKWKIKINPNKTNAIFFTKRRKPRYLPDR-------QLRILD 761
Query: 60 QPIPWARKVKYLGVTLDASM 1
PI W ++YLG+ D +
Sbjct: 762 SPIQWVDNIRYLGIIFDKKL 781
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 62.5 bits (145), Expect = 5e-10
Identities = 32/83 (38%), Positives = 49/83 (59%)
Frame = -3
Query: 506 NGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGXXXXXXXXXX 327
+GL+ KL +G P L+ I+++FL++R F + ++S+ R L AGVPQG
Sbjct: 568 DGLLHKLKMIGTPIYLIKIVQNFLTHRYFSVNLNSSQSARRILNAGVPQGSVLGPTLFNI 627
Query: 326 XVNDIPRSPPTHLALFADDTTVY 258
+DIP++ L+LFADD VY
Sbjct: 628 FTHDIPQATNCVLSLFADDAAVY 650
Score = 38.3 bits (85), Expect = 0.010
Identities = 21/80 (26%), Positives = 35/80 (43%)
Frame = -2
Query: 240 SLIAKKLQSAALALGQWFRKWRIDINPAKSTAVLFQXXXXXXXXXXXXXRNLTPPITLFR 61
S I + +QS L +++KW+I INP K+ A+ F + +
Sbjct: 657 SEINQSMQSYLNELDIYYKKWKIKINPNKTNAIFFTKRRKPRYLPDR-------QLRILD 709
Query: 60 QPIPWARKVKYLGVTLDASM 1
PI W ++YLG+ D +
Sbjct: 710 SPIQWVDNIRYLGIIFDKKL 729
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 61.3 bits (142), Expect = 1e-09
Identities = 28/58 (48%), Positives = 39/58 (67%)
Frame = -1
Query: 682 VSSKGILIDEQFGFRTNHSCVQQVHRFTEHILVGLNRPKPLYTGALFFDVAKAFDKVW 509
++ + IL D QFGFR HS V+QVHR T+HIL + + Y A+F D+ +AFD+VW
Sbjct: 539 MTERRILPDHQFGFRQGHSTVEQVHRLTKHILQAFDDKE--YCNAVFIDMQQAFDRVW 594
Score = 39.1 bits (87), Expect = 0.006
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Frame = -3
Query: 506 NGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGXXXXXXXXXX 327
+GLI K+ + P +++ +L +R F RV + S PR + AGVPQG
Sbjct: 596 DGLISKVKKL-FPAPYYGVLKSYLEDRRFMVRVRNSYSIPRVMRAGVPQGSVLGPLLYSV 654
Query: 326 XVNDIPRSPPTH--------LALFADDTTVYY 255
D+P H LA +ADD + Y
Sbjct: 655 FTADLPCPNAYHMADPRKALLATYADDIALLY 686
Score = 32.3 bits (70), Expect = 0.64
Identities = 24/84 (28%), Positives = 35/84 (41%)
Frame = -2
Query: 261 LLSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVLFQXXXXXXXXXXXXXRNLT 82
L SS + A+ LQ L W ++W + +NP K+ F +T
Sbjct: 685 LYSSNCCNEAARGLQEYLTTLAAWCKRWILKVNPQKTINPCFTLKTLSP---------VT 735
Query: 81 PPITLFRQPIPWARKVKYLGVTLD 10
PI L + + KYLG+TLD
Sbjct: 736 APIELEGVILDQPSQAKYLGITLD 759
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 55.2 bits (127), Expect = 8e-08
Identities = 24/58 (41%), Positives = 36/58 (62%)
Frame = -1
Query: 682 VSSKGILIDEQFGFRTNHSCVQQVHRFTEHILVGLNRPKPLYTGALFFDVAKAFDKVW 509
+ ++GI + QFGFR H V+Q+HR E IL + + Y +LF D+ +AFD+VW
Sbjct: 538 MEAQGITPEHQFGFRAGHCTVEQLHRVVEQILTAYDSKE--YCNSLFLDIREAFDRVW 593
Score = 40.3 bits (90), Expect = 0.002
Identities = 27/81 (33%), Positives = 35/81 (43%)
Frame = -2
Query: 252 SRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVLFQXXXXXXXXXXXXXRNLTPPI 73
SR + A +Q A +W R+W I IN +KS V F R PP+
Sbjct: 684 SRCEHDAADGIQDFAYRFSEWARRWNIGINSSKSNNVCF-----------TLKRRTPPPV 732
Query: 72 TLFRQPIPWARKVKYLGVTLD 10
+ P+P KYLGV LD
Sbjct: 733 YIEEVPVPQPNAAKYLGVLLD 753
Score = 34.3 bits (75), Expect = 0.16
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Frame = -3
Query: 452 IIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGXXXXXXXXXXXVNDIPRSP-----PTHL 288
+++ +L R F R S+ + AGVPQG +D+P+ + L
Sbjct: 612 LLKSYLEGRRFAVRFHSAISTEHNVAAGVPQGSVLGPLLYCLYSHDMPQPDVSLYGKSML 671
Query: 287 ALFADDTTVYY 255
A FADD V Y
Sbjct: 672 ATFADDVCVTY 682
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 52.4 bits (120), Expect = 6e-07
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Frame = -3
Query: 503 GLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGXXXXXXXXXXX 324
GL++K + P L L+++ FL R+F V+G +SS +P+ AGVPQG
Sbjct: 598 GLLYKAKRL-FPPQLYLVVKSFLEERTFHVSVDGYKSSIKPIAAGVPQGSVLGPTLYSVF 656
Query: 323 VNDIPRSPPTH--------LALFADDTTV 261
+D+P P +A +ADDT V
Sbjct: 657 ASDMPTHTPVTEVDEEDVLIATYADDTAV 685
Score = 41.1 bits (92), Expect = 0.001
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = -1
Query: 652 QFGFRTNHSCVQQVHRFTEHILVGLNRPKPLYTGALFFDVAKAFDKVW 509
QFGFR H +Q+HR L + + Y F D+ +AFD+VW
Sbjct: 550 QFGFRLQHGTPEQLHRVVNFALEAMENKE--YAVGAFLDIQQAFDRVW 595
Score = 29.9 bits (64), Expect = 3.4
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
Frame = -2
Query: 267 DCLLSSRNKSLIAKK--LQSAALALGQWFRKWRIDINPAKSTAVLFQXXXXXXXXXXXXX 94
D + +++KS++A LQ A QW W + IN K V F
Sbjct: 682 DTAVLTKSKSILAATSGLQEYLDAFQQWAENWNVRINAEKCANVTF-----------ANR 730
Query: 93 RNLTPPITLFRQPIPWARKVKYLGVTLDASM 1
P ++L + I + KYLG+TLD +
Sbjct: 731 TGSCPGVSLNGRLIRHHQAYKYLGITLDRKL 761
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 52.4 bits (120), Expect = 6e-07
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Frame = -3
Query: 503 GLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGXXXXXXXXXXX 324
GL++K + P L L+++ FL R+F V+G +SS +P+ AGVPQG
Sbjct: 400 GLLYKAKRL-FPPQLYLVVKSFLEERTFHVSVDGYKSSIKPIAAGVPQGSVLGPTLYSVF 458
Query: 323 VNDIPRSPPTH--------LALFADDTTV 261
+D+P P +A +ADDT V
Sbjct: 459 ASDMPTHTPVTEVDEEDVLIATYADDTAV 487
Score = 41.1 bits (92), Expect = 0.001
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = -1
Query: 652 QFGFRTNHSCVQQVHRFTEHILVGLNRPKPLYTGALFFDVAKAFDKVW 509
QFGFR H +Q+HR L + + Y F D+ +AFD+VW
Sbjct: 352 QFGFRLQHGTPEQLHRVVNFALEAMENKE--YAVGAFLDIQQAFDRVW 397
Score = 29.9 bits (64), Expect = 3.4
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
Frame = -2
Query: 267 DCLLSSRNKSLIAKK--LQSAALALGQWFRKWRIDINPAKSTAVLFQXXXXXXXXXXXXX 94
D + +++KS++A LQ A QW W + IN K V F
Sbjct: 484 DTAVLTKSKSILAATSGLQEYLDAFQQWAENWNVRINAEKCANVTF-----------ANR 532
Query: 93 RNLTPPITLFRQPIPWARKVKYLGVTLDASM 1
P ++L + I + KYLG+TLD +
Sbjct: 533 TGSCPGVSLNGRLIRHHQAYKYLGITLDRKL 563
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 49.2 bits (112), Expect = 5e-06
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = -1
Query: 652 QFGFRTNHSCVQQVHRFTEHILVGLNRPKPLYTGALFFDVAKAFDKVW 509
QFGFR H QQ+ R T+ IL R + Y A+F D+++AFD+VW
Sbjct: 593 QFGFRKEHGSEQQIARVTQFILEAFERKE--YCSAVFLDISEAFDRVW 638
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 49.2 bits (112), Expect = 5e-06
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = -1
Query: 652 QFGFRTNHSCVQQVHRFTEHILVGLNRPKPLYTGALFFDVAKAFDKVW 509
QFGFR H QQ+ R T+ IL R + Y A+F D+++AFD+VW
Sbjct: 477 QFGFRKEHGTEQQIARVTQFILEAFERKE--YCSAVFLDISEAFDRVW 522
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 49.2 bits (112), Expect = 5e-06
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = -1
Query: 652 QFGFRTNHSCVQQVHRFTEHILVGLNRPKPLYTGALFFDVAKAFDKVW 509
QFGFR H QQ+ R T+ IL R + Y A+F D+++AFD+VW
Sbjct: 605 QFGFRKEHGTEQQIARVTQFILEAFERKE--YCSAVFLDISEAFDRVW 650
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 49.2 bits (112), Expect = 5e-06
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = -1
Query: 652 QFGFRTNHSCVQQVHRFTEHILVGLNRPKPLYTGALFFDVAKAFDKVW 509
QFGFR H QQ+ R T+ IL R + Y A+F D+++AFD+VW
Sbjct: 593 QFGFRKEHGTEQQIARVTQFILEAFERKE--YCSAVFLDISEAFDRVW 638
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 49.2 bits (112), Expect = 5e-06
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = -1
Query: 652 QFGFRTNHSCVQQVHRFTEHILVGLNRPKPLYTGALFFDVAKAFDKVW 509
QFGFR H QQ+ R T+ IL R + Y A+F D+++AFD+VW
Sbjct: 593 QFGFRKEHGTEQQIARVTQFILEAFERKE--YCSAVFLDISEAFDRVW 638
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 49.2 bits (112), Expect = 5e-06
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = -1
Query: 652 QFGFRTNHSCVQQVHRFTEHILVGLNRPKPLYTGALFFDVAKAFDKVW 509
QFGFR H QQ+ R T+ IL R + Y A+F D+++AFD+VW
Sbjct: 555 QFGFRKEHGTEQQIARVTQFILEAFERKE--YCSAVFLDISEAFDRVW 600
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 49.2 bits (112), Expect = 5e-06
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = -1
Query: 652 QFGFRTNHSCVQQVHRFTEHILVGLNRPKPLYTGALFFDVAKAFDKVW 509
QFGFR H QQ+ R T+ IL R + Y A+F D+++AFD+VW
Sbjct: 593 QFGFRKEHGTEQQIARVTQFILEAFERKE--YCSAVFLDISEAFDRVW 638
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 48.8 bits (111), Expect = 7e-06
Identities = 22/48 (45%), Positives = 29/48 (60%)
Frame = -1
Query: 652 QFGFRTNHSCVQQVHRFTEHILVGLNRPKPLYTGALFFDVAKAFDKVW 509
QFGFR H ++QV+R T I + Y A+F DVA+AFD+VW
Sbjct: 544 QFGFREKHGTIEQVNRITSEIRTAFEHRE--YCTAIFLDVAQAFDRVW 589
Score = 42.7 bits (96), Expect = 4e-04
Identities = 24/82 (29%), Positives = 39/82 (47%)
Frame = -3
Query: 506 NGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGXXXXXXXXXX 327
+GL+FK+ + +P + +++ +L NR F R + + S + AGVPQG
Sbjct: 591 DGLLFKIIKL-LPQNTHKLLKSYLYNRVFAIRCDTSTSRDCAIEAGVPQGSVLGPILYTL 649
Query: 326 XVNDIPRSPPTHLALFADDTTV 261
D P + FADDT +
Sbjct: 650 YTADFPIDYNLTTSTFADDTAI 671
Score = 33.1 bits (72), Expect = 0.36
Identities = 31/88 (35%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Frame = -2
Query: 267 DCLLSSRNKSLI-AKKLQSAAL-ALGQWFRKWRIDINPAKSTAVLFQXXXXXXXXXXXXX 94
D + SR+K I A L S L ++ +W WRI IN K V F
Sbjct: 668 DTAILSRSKCPIKATALLSRHLTSVERWLADWRISINVQKCKQVTFTLNK---------- 717
Query: 93 RNLTPPITLFRQPIPWARKVKYLGVTLD 10
PP+ L IP A +V YLGV LD
Sbjct: 718 -QTCPPLVLNNICIPQADEVTYLGVHLD 744
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 48.8 bits (111), Expect = 7e-06
Identities = 22/48 (45%), Positives = 29/48 (60%)
Frame = -1
Query: 652 QFGFRTNHSCVQQVHRFTEHILVGLNRPKPLYTGALFFDVAKAFDKVW 509
QFGFR H ++QV+R T I + Y A+F DVA+AFD+VW
Sbjct: 544 QFGFREKHGTIEQVNRITSEIRTAFEHRE--YCTAIFLDVAQAFDRVW 589
Score = 40.3 bits (90), Expect = 0.002
Identities = 23/82 (28%), Positives = 38/82 (46%)
Frame = -3
Query: 506 NGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGXXXXXXXXXX 327
+GL+FK+ + +P + +++ +L N F R + + S + AGVPQG
Sbjct: 591 DGLLFKIIKL-LPQNTHKLLKSYLYNTVFAIRCDTSTSRDCAIEAGVPQGSVLGPILYTL 649
Query: 326 XVNDIPRSPPTHLALFADDTTV 261
D P + FADDT +
Sbjct: 650 YTADFPIDYNLTTSTFADDTAI 671
Score = 33.1 bits (72), Expect = 0.36
Identities = 31/88 (35%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Frame = -2
Query: 267 DCLLSSRNKSLI-AKKLQSAAL-ALGQWFRKWRIDINPAKSTAVLFQXXXXXXXXXXXXX 94
D + SR+K I A L S L ++ +W WRI IN K V F
Sbjct: 668 DTAILSRSKCPIKATALLSRHLTSVERWLADWRISINVQKCKQVTFTLNK---------- 717
Query: 93 RNLTPPITLFRQPIPWARKVKYLGVTLD 10
PP+ L IP A +V YLGV LD
Sbjct: 718 -QTCPPLVLNNICIPQADEVTYLGVHLD 744
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 48.0 bits (109), Expect = 1e-05
Identities = 23/53 (43%), Positives = 32/53 (60%)
Frame = -1
Query: 667 ILIDEQFGFRTNHSCVQQVHRFTEHILVGLNRPKPLYTGALFFDVAKAFDKVW 509
I+ QFGFR +H ++QV+R T I + Y A+F DV++AFDKVW
Sbjct: 541 IIPAHQFGFRESHGTIEQVNRITTEIRTAFEYRE--YCTAVFLDVSQAFDKVW 591
Score = 47.6 bits (108), Expect = 2e-05
Identities = 25/82 (30%), Positives = 42/82 (51%)
Frame = -3
Query: 506 NGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGXXXXXXXXXX 327
+GL+FK+ + +P+S +++ +L +R F R S+ + AGVPQG
Sbjct: 593 DGLMFKI-KISLPESTHKLLKSYLYDRKFAVRCNTATSTVHTIEAGVPQGSVLGPTLYLI 651
Query: 326 XVNDIPRSPPTHLALFADDTTV 261
DIP + ++ FADDT +
Sbjct: 652 YTADIPTNSRLTVSTFADDTAI 673
>AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p
protein.
Length = 241
Score = 47.2 bits (107), Expect = 2e-05
Identities = 25/82 (30%), Positives = 41/82 (50%)
Frame = -3
Query: 506 NGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGXXXXXXXXXX 327
+GL+FK+ + +P ++ +++ +L R F R + SS + AGVPQG
Sbjct: 132 DGLMFKIIQL-LPQNIHKLLKSYLDKRVFAVRCSSSTSSDFTIEAGVPQGSVLGPILYTL 190
Query: 326 XVNDIPRSPPTHLALFADDTTV 261
DIP + + FADDT +
Sbjct: 191 YTADIPTNYQLTIFTFADDTAI 212
Score = 44.4 bits (100), Expect = 1e-04
Identities = 21/48 (43%), Positives = 27/48 (56%)
Frame = -1
Query: 652 QFGFRTNHSCVQQVHRFTEHILVGLNRPKPLYTGALFFDVAKAFDKVW 509
QF F H ++QV+R T I + Y ALF DVA+AFD+VW
Sbjct: 85 QFDFPAKHGAIEQVNRITTEIRTAFEHRE--YCTALFLDVAQAFDRVW 130
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 43.6 bits (98), Expect = 3e-04
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Frame = -3
Query: 506 NGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGXXXXXXXXXX 327
+ ++ +L G+ L +I+ F++NRSFR R+ S+ L G+PQG
Sbjct: 595 HAVLCRLERWGIGPRLYNLIKAFMTNRSFRVRINNVTSNSHILHNGIPQGSPLSVVLFMI 654
Query: 326 XVNDI----PRSPPTHLALFADDTTVY 258
+ DI R +++L+ADD ++
Sbjct: 655 AIEDINDIVTRHKDIYISLYADDAIIF 681
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 41.1 bits (92), Expect = 0.001
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Frame = -3
Query: 506 NGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEG-TRSSPRPLTAGVPQGXXXXXXXXX 330
+GL++KL + +P L ++ ++LSNR+F R++G T S + AGVPQG
Sbjct: 196 DGLLYKLSRL-IPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLYS 254
Query: 329 XXVNDIP 309
+D+P
Sbjct: 255 IYSSDMP 261
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = -1
Query: 652 QFGFRTNHSCVQQVHRFTEHILVGLNRPKPLYTGALFFDVAKAFDKVW 509
QFGFR +H Q+ R T+ IL + A F D+ +AFD+VW
Sbjct: 149 QFGFRKDHGAEHQLARVTQFILKAFDEKD--VCSATFLDITEAFDRVW 194
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 41.1 bits (92), Expect = 0.001
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Frame = -3
Query: 506 NGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEG-TRSSPRPLTAGVPQGXXXXXXXXX 330
+GL++KL + +P L ++ ++LSNR+F R++G T S + AGVPQG
Sbjct: 643 DGLLYKLSRL-IPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLYS 701
Query: 329 XXVNDIP 309
+D+P
Sbjct: 702 IYSSDMP 708
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = -1
Query: 652 QFGFRTNHSCVQQVHRFTEHILVGLNRPKPLYTGALFFDVAKAFDKVW 509
QFGFR +H Q+ R T+ IL + A F D+ +AFD+VW
Sbjct: 596 QFGFRKDHGAEHQLARVTQFILKAFDEKD--VCSATFLDITEAFDRVW 641
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 41.1 bits (92), Expect = 0.001
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Frame = -3
Query: 506 NGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEG-TRSSPRPLTAGVPQGXXXXXXXXX 330
+GL++KL + +P L ++ ++LSNR+F R++G T S + AGVPQG
Sbjct: 643 DGLLYKLSRL-IPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLYS 701
Query: 329 XXVNDIP 309
+D+P
Sbjct: 702 IYSSDMP 708
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = -1
Query: 652 QFGFRTNHSCVQQVHRFTEHILVGLNRPKPLYTGALFFDVAKAFDKVW 509
QFGFR +H Q+ R T+ IL + A F D+ +AFD+VW
Sbjct: 596 QFGFRKDHGAEHQLARVTQFILKAFDEKD--VCSATFLDITEAFDRVW 641
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 41.1 bits (92), Expect = 0.001
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Frame = -3
Query: 506 NGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEG-TRSSPRPLTAGVPQGXXXXXXXXX 330
+GL++KL + +P L ++ ++LSNR+F R++G T S + AGVPQG
Sbjct: 643 DGLLYKLSRL-IPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLYS 701
Query: 329 XXVNDIP 309
+D+P
Sbjct: 702 IYSSDMP 708
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = -1
Query: 652 QFGFRTNHSCVQQVHRFTEHILVGLNRPKPLYTGALFFDVAKAFDKVW 509
QFGFR +H Q+ R T+ IL + A F D+ +AFD+VW
Sbjct: 596 QFGFRKDHGAEHQLARVTQFILKAFDEKD--VCSATFLDITEAFDRVW 641
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 35.9 bits (79), Expect = 0.052
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = -3
Query: 461 LVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQG 357
++ I++F+SNR RV SSP PL G+PQG
Sbjct: 602 IIKYIKNFMSNRKITVRVGPHTSSPLPLFNGIPQG 636
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 31.1 bits (67), Expect = 1.5
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Frame = -3
Query: 482 NMGVPDSLVLIIRDFLSNRSFRYRVE-GTRSSPRPLTAGVPQGXXXXXXXXXXXVN---D 315
N+GVPD + +I ++ +R Y E G RS ++AGVPQG +
Sbjct: 576 NLGVPDYIRGVIGNYFRDRVLWYVTEDGPRS--HQVSAGVPQGSVLGPILWNIMYDGILS 633
Query: 314 IPRSPPTHLALFADDTTVYYLVEISP 237
I + L FADD + + + P
Sbjct: 634 ISKPRGVELHCFADDVAITAVAKTIP 659
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,742,188
Number of Sequences: 53049
Number of extensions: 720966
Number of successful extensions: 2052
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2035
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2992560750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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