Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021192
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein ...    30   1.6  
At2g41700.1 68415.m05151 ABC transporter family protein similar ...    29   2.2  
At2g43940.1 68415.m05461 thiol methyltransferase, putative simil...    29   3.8  
At5g58300.1 68418.m07298 leucine-rich repeat transmembrane prote...    28   5.0  
At3g06070.1 68416.m00694 expressed protein                             28   6.6  
At2g29250.1 68415.m03554 lectin protein kinase, putative similar...    28   6.6  

>At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein
           contains Pfam domain PF00096: Zinc finger, C2H2 type
          Length = 367

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 456 AHHTGLLVEPLFSISSRGNPLLPTTSHSWSPARLCPLTPP 337
           A H G   +PLF + + G    PT++ +  P+ +  +TPP
Sbjct: 178 AAHLGYRPQPLFPVQNMGMTPTPTSAPAIQPSPVTGVTPP 217


>At2g41700.1 68415.m05151 ABC transporter family protein similar to
           ATP-binding cassette transporter ABCA1 GI:18031705 from
           [Arabidopsis thaliana]
          Length = 1822

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = -1

Query: 553 GALFFDVAKAFD----KVWTMV*FSNYSTWACRIVSCSSYGTSCRTALF 419
           G +   VAKAF      VWT++ F +     C I+S S +   C+ ALF
Sbjct: 854 GVIITSVAKAFRLIVAAVWTLIGFISIQCCGCSIISRSMFWRHCK-ALF 901


>At2g43940.1 68415.m05461 thiol methyltransferase, putative similar
           to thiol methyltransferase 2 GI:14583121 from [Brassica
           oleracea]
          Length = 226

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 478 WACRIVSCSSYGTSCRTALFDIESREPAPPHDLSQLESRKAL 353
           WA R+      G    T +F I+ R   PP+++S  E  K L
Sbjct: 146 WAQRMEKLLKPGGELITLMFPIDERSGGPPYEVSVSEYEKVL 187


>At5g58300.1 68418.m07298 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 654

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -1

Query: 463 VSCSSYGTSCRTA-LFDIESREPAPPHDLSQLESRKALSSHPSYLA 329
           V+C+S GTS     L  I    P PP+ L +LES + LS   + L+
Sbjct: 80  VTCTSDGTSVHALRLPGIGLLGPIPPNTLGKLESLRILSLRSNLLS 125


>At3g06070.1 68416.m00694 expressed protein
          Length = 151

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = -1

Query: 202 PRTVVPKMAHRHQPSEKYCGAISEGKLHTDFLPD*EEESHTPDYSL*TTHTLGQE 38
           PR+  P+  H H P +K      +G+    F+P  +   H  D +L T +   QE
Sbjct: 79  PRSSQPRRKHNHHPHQK-----KQGRFIGSFIPKQQFPHHGHDNNLTTLNNNNQE 128


>At2g29250.1 68415.m03554 lectin protein kinase, putative similar to
           receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains protein kinase domain,
           Pfam:PF00069; contains legume lectins alpha and beta
           domains, Pfam:PF00138 and Pfam:PF00139
          Length = 623

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +3

Query: 489 FENQTIVQTLSNAFATSKKRAPVYNGF---GRLSPTRMCSVKRCTC*THE 629
           F +QTI  + +  F  SK      +G    G+L+PT + +VKR TC T +
Sbjct: 340 FSHQTI-SSATGGFDNSKLLGEGNSGSFYKGQLAPTEIIAVKRITCNTRQ 388


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,540,513
Number of Sequences: 28952
Number of extensions: 333759
Number of successful extensions: 887
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)