Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021189
         (653 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    46   3e-07
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    44   8e-07
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    44   1e-06
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    44   1e-06
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    44   1e-06
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    32   0.005
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    26   0.24 
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    23   2.2  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    23   2.2  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    22   5.1  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   5.1  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   6.7  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   8.9  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   8.9  

>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 46.0 bits (104), Expect = 3e-07
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
 Frame = +2

Query: 251 EWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDIS 424
           +WN  E+G    L ++  +LW+PDV++ N+A     G +     V +NGS  ++      
Sbjct: 66  KWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGSCLYVPPGIFK 125

Query: 425 TPISMQLDNWPNDMQTCTFKFGS 493
           +   M +  +P D Q C  KFGS
Sbjct: 126 STCKMDITWFPFDDQHCDMKFGS 148


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 44.4 bits (100), Expect = 8e-07
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
 Frame = +2

Query: 251 EWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDIS 424
           +WN  E+G    L ++  +LW+PDV++ N+A     G +     V +NGS  ++      
Sbjct: 66  KWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGSCLYVPPGIFK 125

Query: 425 TPISMQLDNWPNDMQTCTFKFGS 493
           +   + +  +P D Q C  KFGS
Sbjct: 126 STCKIDITWFPFDDQHCDMKFGS 148


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 44.0 bits (99), Expect = 1e-06
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
 Frame = +2

Query: 224 SNELDRQTTEWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSV 397
           S E +    +WN  E+G    L ++  +LW+PDV++ N+A     G +     V + GS 
Sbjct: 57  SLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGSC 116

Query: 398 SWIKRLDISTPISMQLDNWPNDMQTCTFKFGS 493
            ++      +   M +  +P D Q C  KFGS
Sbjct: 117 LYVPPGIFKSTCKMDITWFPFDDQHCDMKFGS 148


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 44.0 bits (99), Expect = 1e-06
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
 Frame = +2

Query: 224 SNELDRQTTEWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSV 397
           S E +    +WN  E+G    L ++  +LW+PDV++ N+A     G +     V + GS 
Sbjct: 57  SLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGSC 116

Query: 398 SWIKRLDISTPISMQLDNWPNDMQTCTFKFGS 493
            ++      +   M +  +P D Q C  KFGS
Sbjct: 117 LYVPPGIFKSTCKMDITWFPFDDQHCDMKFGS 148


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 43.6 bits (98), Expect = 1e-06
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
 Frame = +2

Query: 251 EWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWIKRLDIS 424
           +WN  E+G    L ++  +LW+PDV++ N+A     G +     V + GS  ++      
Sbjct: 66  KWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGSCLYVPPGIFK 125

Query: 425 TPISMQLDNWPNDMQTCTFKFGS 493
           +   M +  +P D Q C  KFGS
Sbjct: 126 STCKMDITWFPFDDQHCDMKFGS 148


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 31.9 bits (69), Expect = 0.005
 Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
 Frame = +2

Query: 272 GCSTWLVSSE---RLWRPDVVLLNAA------ATTAGDYALRARVSNNGSVSWIKRLDIS 424
           G  T  V SE    +W PD   +N        ATT+ ++    RV ++GS++   RL I+
Sbjct: 108 GVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RVHHSGSITRSIRLTIT 164

Query: 425 TPISMQLDNWPNDMQTCTFKFGS 493
               M L   P D Q C  +  S
Sbjct: 165 ASCPMNLQYLPMDRQLCHIEIES 187


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 362 ALRARVSNNGSVSWIKRLDISTPISMQLDNWPND 463
           A+   +  N + SW + ++  + + M LDNW ND
Sbjct: 272 AIEGIIFFNLAKSWPQLIEKWSRVEMALDNWKND 305


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 525 HEIHFVLLCILEPNLNVQVCMSLGQLS 445
           H+I   LLCIL   L + + +++ +L+
Sbjct: 277 HDIFLPLLCILTNTLEILITVTVCELT 303


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 525 HEIHFVLLCILEPNLNVQVCMSLGQLS 445
           H+I   LLCIL   L + + +++ +L+
Sbjct: 102 HDIFLPLLCILTNTLEILITVTVCELT 128


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -2

Query: 409 LYPG-DGAVIRYTGAESVVPGGGC 341
           LY G DG+VI     E VV G GC
Sbjct: 348 LYLGSDGSVILKNYKEMVVVGCGC 371


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 642 LEHCHASFHFATVLAL 595
           L HCH  FH    +AL
Sbjct: 601 LFHCHIEFHVEVGMAL 616


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -1

Query: 65   AFCRTSYSTSEEKR*QNNIS 6
            A C   YST EEK  Q N S
Sbjct: 1374 AVCDACYSTIEEKNLQVNES 1393


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 187 RMLACLKCRVRLTTILESGGDSRS 116
           R+  C++C      ILE  GD  S
Sbjct: 509 RLFTCMECPNNYPWILEPTGDGFS 532


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 228 MNWIDKRLSGTQGNGAAALGWCPRN 302
           M+    R+   + + A ALGW P N
Sbjct: 142 MHKYQPRILIVKASTAQALGWAPTN 166


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,775
Number of Sequences: 336
Number of extensions: 3811
Number of successful extensions: 23
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)