Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021189
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    30   0.34 
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    29   0.59 
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    28   1.0  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    26   4.1  
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    25   7.2  
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    25   7.2  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    25   9.5  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    25   9.5  
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|...    25   9.5  

>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 115 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNRII 11
           Y    ES + D+ +  SH+ A +I Q  R+G R++
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKRLL 97


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 562 LLTRTYCIFFCQSRNPFRTIVHPRTELERASL 467
           LL  + C+FFC  R  ++ +  PRT +E  +L
Sbjct: 33  LLGASACVFFCFFRKRWKVLYAPRTTIEGLNL 64


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 368 RARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNST 511
           RA +++   +  +KR DI    +   DNW ND+  C  + G  +H+ T
Sbjct: 588 RAVIAHMLELDPVKRYDIHRVFA---DNWINDISMCHMENGKVIHSPT 632


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/30 (30%), Positives = 12/30 (40%)
 Frame = +2

Query: 215 GRSSNELDRQTTEWNAGEWGCSTWLVSSER 304
           GR        T  W  G W   +W ++S R
Sbjct: 292 GRQITRFGTLTARWKTGVWSLGSWGIASPR 321


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 314 ASTSVPRTPAKCCSPIPLRS-TQSFVDPIHLKICQ 213
           ASTS+P TP+K    + + S   S VD + +KI Q
Sbjct: 3   ASTSIPETPSKLPDALLVNSDPASKVDNVSVKIEQ 37


>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 191 VRVHRADTGRSSNELDRQTTEWNAGE 268
           +R H+   GR+  ELDR+ T+ +  E
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQRE 43


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -1

Query: 365 ERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPIPLRSTQSFVDPIH 228
           E  P   L  R+ VP Q +TS P  PA+  SP+P  S + +  P H
Sbjct: 6   EAMPLVTLSERM-VP-QVNTS-PFAPAQSSSPLPSNSCREYSLPSH 48


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 282 VLQPHSPAFHSVVCRSNSFED 220
           ++Q  +PA+H+ + R N F D
Sbjct: 341 IIQSTNPAYHNAIVRVNIFRD 361


>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 684

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 221 SSNELDRQTTEW-NAGEWGCSTWLVSSERLWRPDV 322
           ++ E D  T++  N G+W   TW  +  R W  DV
Sbjct: 168 AAKEYDALTSKLGNTGDWIYDTWSDNELRTWLHDV 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,889,373
Number of Sequences: 5004
Number of extensions: 61444
Number of successful extensions: 181
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)