Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021189
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1747 + 29188568-29188715,29188793-29189541 31 1.1
01_06_1147 + 34892415-34893702,34894051-34894676 31 1.1
04_04_1262 + 32200823-32201190,32201311-32201818,32201927-322020... 25 2.3
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 29 2.4
08_02_1498 + 27553449-27553730,27553834-27553946,27554063-275541... 29 4.3
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 28 5.6
03_05_0164 - 21432289-21432355,21433612-21433699,21433859-214339... 28 5.6
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 5.6
08_02_0813 + 21459776-21461128 28 7.5
04_03_1027 - 21820843-21820878,21820974-21821117,21821220-218213... 28 7.5
04_03_0558 + 17111138-17111996,17112474-17112564,17112647-171132... 28 7.5
09_04_0031 + 13946692-13946774,13947007-13948012 27 9.9
06_03_0859 - 25473784-25473798,25473862-25473923,25474251-254743... 27 9.9
02_05_1184 + 34802749-34802892,34802981-34803220,34803636-348039... 27 9.9
02_01_0794 - 5955763-5957238 27 9.9
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +3
Query: 345 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSSVLG 497
PPP TT++ V L TA + S + QF+C+ TTC + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260
>01_06_1147 + 34892415-34893702,34894051-34894676
Length = 637
Score = 30.7 bits (66), Expect = 1.1
Identities = 35/111 (31%), Positives = 46/111 (41%), Gaps = 1/111 (0%)
Frame = +3
Query: 75 TSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQ-MNWIDKRL 251
TS +D T+D E P + + LT L N L L+ +N + L
Sbjct: 139 TSTLTFLDLSYNTFDGEIPLRVQNLTQLTALLLQNNSLSGPIPDLQLPKLRHLNLSNNNL 198
Query: 252 SGTQGNGAAALGWCPRNACGGLTWYC*TRLQPPPGTTLSAPVYLITAPSPG 404
SG +L P N+ G + C LQP PGT S P T+PSPG
Sbjct: 199 SGPI---PPSLQRFPANSFLGNAFLCGFPLQPCPGTAPS-PSPSPTSPSPG 245
>04_04_1262 +
32200823-32201190,32201311-32201818,32201927-32202031,
32202222-32202287,32202471-32202536,32202698-32202751,
32202895-32203041
Length = 437
Score = 25.0 bits (52), Expect(2) = 2.3
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -2
Query: 328 QYHVRPPQAFRGHQPSAAAPFPCVPLSRLSIQF 230
QYH Q GH P+AAA F +R S+QF
Sbjct: 210 QYHQYQQQM--GHAPAAAAKFAQAVGARDSLQF 240
Score = 23.0 bits (47), Expect(2) = 2.3
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = -2
Query: 217 ASIRTVDSDSRMLACLKCRVRLTTILESGGDSRSYVARSESIMR 86
AS+R+ S + L T +E GDS S + + E+ +
Sbjct: 270 ASVRSAKRSSPAPPRAAATLALKTAMEGVGDSSSVITKKETAFK 313
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 206 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 117
+GG L ++Q G Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129
>08_02_1498 +
27553449-27553730,27553834-27553946,27554063-27554129,
27554310-27554402,27554516-27554659,27554860-27554954,
27555120-27555412,27555514-27555632,27555742-27556094,
27556177-27556286,27556403-27556512,27556802-27557671
Length = 882
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/39 (43%), Positives = 19/39 (48%)
Frame = +3
Query: 243 KRLSGTQGNGAAALGWCPRNACGGLTWYC*TRLQPPPGT 359
+R+ QG GA A W P LTWY R PP GT
Sbjct: 637 RRVHSEQGMGAVA--WKPGKDNQPLTWYR-RRFDPPSGT 672
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +3
Query: 78 SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMN 233
+L +D L+ YD+ PPDS+ V HA + +R+L + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209
>03_05_0164 -
21432289-21432355,21433612-21433699,21433859-21433954,
21434284-21434563
Length = 176
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 332 LAVPRQASTSVPRTPAKCCSPIPLRSTQSFVD 237
LA+P S S R P + SP PL TQ+ +D
Sbjct: 24 LALPPPLSPSTTRIPQRRPSPAPLPCTQALLD 55
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 374 GRGERSPRRWLQPRLAVPRQASTSVPRTP 288
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>08_02_0813 + 21459776-21461128
Length = 450
Score = 27.9 bits (59), Expect = 7.5
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +2
Query: 263 GEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPISMQ 442
G++ C WL + R P LL+ TT R V+ W K+ IS P+S++
Sbjct: 238 GDYRCPAWLSTDARRLIPR--LLDPNPTT------RISVAQLVETPWFKKTSISRPVSIE 289
Query: 443 L 445
L
Sbjct: 290 L 290
>04_03_1027 -
21820843-21820878,21820974-21821117,21821220-21821358,
21821522-21821652,21823615-21823670,21823964-21824258
Length = 266
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -1
Query: 365 ERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPIPLRSTQSFVDPIHL 225
E + R W + RLA+ ++ V R K P+P T +F+ HL
Sbjct: 47 EAAKRGWSEIRLAIEELSAVDVERRGGKPPPPLPPPPTLTFLALSHL 93
>04_03_0558 +
17111138-17111996,17112474-17112564,17112647-17113268,
17113378-17113457,17113871-17113937,17114138-17114263,
17114333-17114415,17115334-17115777,17115834-17115927,
17116038-17116124,17116474-17116594,17116671-17116709,
17116828-17116997
Length = 960
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 425 TPISMQLDN-WPNDMQTCTFKFGSRMHNSTK 514
+PI + D W QTC FG+R+H+ TK
Sbjct: 861 SPIEINRDLVWELRRQTCIVHFGTRVHSVTK 891
>09_04_0031 + 13946692-13946774,13947007-13948012
Length = 362
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 267 NGAAALGWCPRNACGGLTWYC*TR 338
NG AALGW R+ G L+ + TR
Sbjct: 4 NGTAALGWAARDTSGHLSPFSFTR 27
>06_03_0859 -
25473784-25473798,25473862-25473923,25474251-25474345,
25475718-25475831,25476490-25476695,25476834-25476959,
25479516-25480178
Length = 426
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -2
Query: 649 KTSGTLPRELPLRHGPGSAPHWTDPSHPTLL 557
++SG LPR LPL P S P + SH LL
Sbjct: 63 RSSGPLPRPLPLLPSPASGP-LSQLSHSGLL 92
>02_05_1184 +
34802749-34802892,34802981-34803220,34803636-34803950,
34804030-34804209,34804312-34804504,34805062-34805324,
34805461-34805590,34805719-34805786,34805951-34806199,
34806284-34806357,34808052-34808143,34808603-34808685,
34810337-34810408,34810558-34810683,34810996-34811037
Length = 756
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -2
Query: 136 SGGDSRSYVARSESIMRDSDVAFSHSAALAIAQVRRNGNRI 14
S GD + + I + SDV SHSA + V NG +
Sbjct: 339 SFGDRQEIKLHRQGIYKASDVTLSHSAQIGANSVVGNGTSV 379
>02_01_0794 - 5955763-5957238
Length = 491
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Frame = +3
Query: 183 IRESESTVRILADLQMNWIDKRLSGTQGNGAAALGWCPR------NACGGLTWYC 329
++ESE++ R ++Q W+D+ ++ T G GW P+ +A GG +C
Sbjct: 322 VKESEASSR--PEVQ-EWLDEFMARTATRGLVVRGWAPQVTILSHHAVGGFLTHC 373
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,913,406
Number of Sequences: 37544
Number of extensions: 503707
Number of successful extensions: 1712
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1711
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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