Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021189
(653 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g12980.1 68414.m01507 AP2 domain-containing transcription fac... 31 0.88
At2g38970.1 68415.m04789 zinc finger (C3HC4-type RING finger) fa... 29 3.6
At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2) (P... 28 4.7
At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2) (P... 28 4.7
At3g55220.1 68416.m06133 splicing factor, putative contains CPSF... 28 4.7
At3g55200.1 68416.m06131 splicing factor, putative contains CPSF... 28 4.7
At1g15670.1 68414.m01881 kelch repeat-containing F-box family pr... 28 4.7
At5g44470.1 68418.m05449 hypothetical protein 28 6.2
At3g27430.2 68416.m03429 20S proteasome beta subunit B (PBB1) id... 28 6.2
At3g27430.1 68416.m03428 20S proteasome beta subunit B (PBB1) id... 28 6.2
At4g01810.1 68417.m00238 protein transport protein-related relat... 27 8.2
At3g46740.1 68416.m05074 chloroplast outer envelope protein, put... 27 8.2
>At1g12980.1 68414.m01507 AP2 domain-containing transcription
factor, putative / enhancer of shoot regeneration (ESR1)
similar to gb|D38124 EREBP-3 from Nicotiana tabacum and
contains PF|00847 AP2 domain; identical to cDNA enhancer
of shoot regeneration ESR1 GI:18028939, enhancer of
shoot regeneration ESR1 [Arabidopsis thaliana]
GI:18028940
Length = 328
Score = 30.7 bits (66), Expect = 0.88
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = -2
Query: 286 PSAAAPFPCVPLSRLSIQFI*RSASIRTVDSDSRMLACLKCRVRLTTILES--GGDSRSY 113
PSA P P +PL + F A+ R ++ S L C R TT + G S SY
Sbjct: 134 PSARCPLPSLPLDSSTQNFYGAPAAQRIYNTQSIFLRDASCSSRKTTPYNNSFNGSSSSY 193
Query: 112 VARSESIMRDSD 77
A + + S+
Sbjct: 194 SASKTACVSYSE 205
>At2g38970.1 68415.m04789 zinc finger (C3HC4-type RING finger)
family protein very low similarity to SP|P97280
Inter-alpha-trypsin inhibitor heavy chain H3 precursor
{Mesocricetus auratus}; contains Pfam profiles PF00097:
Zinc finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 692
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -1
Query: 350 RWLQPRLAVPRQASTSVPRTPAKCCSPIPLRSTQSFVDPIHLKICQYP 207
RW + +LA+ T +PRT + SP PL ST+ D L +P
Sbjct: 4 RWRRMKLALGLNLCTYLPRTLEE--SPTPLNSTERLSDVALLSPLNWP 49
>At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2)
(PRCFC) identical to 20S proteasome beta subunit PBB2
[Arabidopsis thaliana] GI:3421104, cDNA proteasome
subunit prcfc GI:2511575
Length = 274
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +3
Query: 18 LLPFLLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRH 176
+ P + C +AA+ E T M+ S L + ++ DS++V LTL +H
Sbjct: 76 MAPNIYCCGAGTAADTEAVTD---MVSSQLRLHRYQTGRDSRVVTALTLLKKH 125
>At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2)
(PRCFC) identical to 20S proteasome beta subunit PBB2
[Arabidopsis thaliana] GI:3421104, cDNA proteasome
subunit prcfc GI:2511575
Length = 274
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +3
Query: 18 LLPFLLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRH 176
+ P + C +AA+ E T M+ S L + ++ DS++V LTL +H
Sbjct: 76 MAPNIYCCGAGTAADTEAVTD---MVSSQLRLHRYQTGRDSRVVTALTLLKKH 125
>At3g55220.1 68416.m06133 splicing factor, putative contains CPSF A
subunit region (PF03178); contains weak WD-40 repeat
(PF00400); similar to Splicing factor 3B subunit 3
(SF3b130)/spliceosomal protein/Splicing factor 3B
subunit 3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
EMBL:HSAJ1443_1
Length = 1214
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 374 GRGERSPRRWLQPRLAVPRQASTSVPRTPA 285
GRG RS R L+P LA+ A + +P P+
Sbjct: 426 GRGPRSSLRILRPGLAITEMAVSQLPGQPS 455
>At3g55200.1 68416.m06131 splicing factor, putative contains CPSF A
subunit region (PF03178); contains weak WD-40 repeat
(PF00400); similar to Splicing factor 3B subunit 3
(SF3b130)/spliceosomal protein/Splicing factor 3B
subunit 3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
EMBL:HSAJ1443_1
Length = 1214
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 374 GRGERSPRRWLQPRLAVPRQASTSVPRTPA 285
GRG RS R L+P LA+ A + +P P+
Sbjct: 426 GRGPRSSLRILRPGLAITEMAVSQLPGQPS 455
>At1g15670.1 68414.m01881 kelch repeat-containing F-box family
protein similar to SP|Q9ER30 Kelch-related protein 1
(Sarcosin) {Rattus norvegicus}; contains Pfam profiles
PF01344: Kelch motif, PF00646: F-box domain
Length = 359
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 546 YVRVRSVGCDGSVQCGAEPGPWRSGSS 626
+ R+ SVG D V CG +P WR+ S
Sbjct: 110 FCRLVSVGSDLVVLCGLDPVTWRTSDS 136
>At5g44470.1 68418.m05449 hypothetical protein
Length = 108
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 183 IRESESTVRILADLQMNWIDKRLSGTQGNGAAALGWCPRNACG 311
I +E+ + + D + WI+ + QG + LGW RN+ G
Sbjct: 2 IEVTEAVEQAVIDTR-EWIENIATSEQGTSGSGLGWIIRNSHG 43
>At3g27430.2 68416.m03429 20S proteasome beta subunit B (PBB1)
identical to 20S proteasome beta subunit PBB1 (PBB1)
GB:AAC32066 [Arabidopsis thaliana] (Genetics 149 (2),
677-692 (1998)); contains Pfam profile: PF00227
proteasome A-type and B-type;
Length = 273
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +3
Query: 18 LLPFLLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRH 176
+ P + C +AA+ E T M+ S L + ++ DS+++ LTL +H
Sbjct: 76 MAPNIYCCGAGTAADTEAVTD---MVSSQLRLHRYQTGRDSRVITALTLLKKH 125
>At3g27430.1 68416.m03428 20S proteasome beta subunit B (PBB1)
identical to 20S proteasome beta subunit PBB1 (PBB1)
GB:AAC32066 [Arabidopsis thaliana] (Genetics 149 (2),
677-692 (1998)); contains Pfam profile: PF00227
proteasome A-type and B-type;
Length = 267
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +3
Query: 18 LLPFLLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRH 176
+ P + C +AA+ E T M+ S L + ++ DS+++ LTL +H
Sbjct: 76 MAPNIYCCGAGTAADTEAVTD---MVSSQLRLHRYQTGRDSRVITALTLLKKH 125
>At4g01810.1 68417.m00238 protein transport protein-related related
to Sec23 protein [Homo sapiens] gi|1296664|emb|CAA65774
Length = 880
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -1
Query: 344 LQPRLAVPRQASTSVPRTPAKCCSPIPLRSTQSFVDP 234
L+P P+ T VP +P SPIP R Q P
Sbjct: 18 LEPNRPSPQPDRTPVPHSPPVVASPIPPRFPQPSFRP 54
>At3g46740.1 68416.m05074 chloroplast outer envelope protein,
putative similar to chloroplastic outer envelope
membrane protein (OEP75) [Pisum sativum] GI:633607;
contains Pfam profile PF01103: outer membrane protein,
OMP85 family
Length = 818
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -1
Query: 359 SPRRWLQPRLAVPRQASTSVPRTPA-KCCSPIPLRSTQS 246
S R++L P + + ST PR P+ KC +P R T++
Sbjct: 25 SRRKFLSPSSSRLPRISTQSPRVPSIKCSKSLPNRDTET 63
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,798,046
Number of Sequences: 28952
Number of extensions: 352373
Number of successful extensions: 1093
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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