Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021188
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    30   0.35 
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.4  
SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces ...    25   7.6  

>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 9/68 (13%)
 Frame = -1

Query: 251  HGLVNLGVF-GFSVRARFNYFSIHVIVDKIMCI--------RHFDNILTLSRYHTNFQKT 99
            HG++ +  F G +V +R + FSIHVI   +  +        + FD+ L +S +   F   
Sbjct: 895  HGVMPIFTFMGSTVLSRDDAFSIHVIEQTVKTVISALIRLGKDFDSSLLVSCFVNAFPHI 954

Query: 98   PQNRFLNL 75
            PQ+R L L
Sbjct: 955  PQHRRLRL 962


>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 517 QNTSSFHSEKMTPHKYTSTVQSNYSAHTPGYNVGQSPGY 633
           Q T+ F+S   +PH       +NYSA TP +N   + G+
Sbjct: 236 QQTNGFYSGHNSPH-------TNYSASTPSFNHFNAAGH 267


>SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 311

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 131 LSRYHTNFQKTPQNRFLNLKFRFESNVIRKTENLI 27
           L+    + QKTPQN  L L       +I  TENL+
Sbjct: 12  LALVQISLQKTPQNEELQLLENDLKELISLTENLL 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,541,179
Number of Sequences: 5004
Number of extensions: 49459
Number of successful extensions: 137
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)