Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021188
         (677 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0062 - 10581175-10581879                                         29   3.4  
10_08_0243 - 16124790-16125361,16126358-16126547                       28   6.0  
08_02_1340 - 26256768-26256999,26258105-26258774,26259273-262605...    28   6.0  
07_03_1208 - 24896905-24896931,24897330-24897341,24898058-248983...    28   6.0  
06_03_1506 + 30641428-30642168                                         28   6.0  
05_03_0491 + 14682895-14683365,14684127-14684656,14684739-14685213     28   6.0  
12_02_0064 + 13104835-13105311,13107731-13108119,13108156-131082...    28   7.9  
10_01_0168 - 1883380-1883594,1884572-1888325                           28   7.9  
01_02_0112 - 11230202-11230282,11230362-11230469,11230588-112306...    28   7.9  

>04_03_0062 - 10581175-10581879
          Length = 234

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +1

Query: 592 AHTPGYNVGQSPGYGRTGGRGNLSEL 669
           A TPGY    SPG+  TG   N S L
Sbjct: 107 AETPGYTPTPSPGHNETGVESNSSPL 132


>10_08_0243 - 16124790-16125361,16126358-16126547
          Length = 253

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 583 NYSAHTPGYNVGQSPGYGRTGGRGN 657
           NY AH  G   G+  GY + GG G+
Sbjct: 125 NYGAHASGGGGGEGGGYSQYGGSGS 149


>08_02_1340 -
           26256768-26256999,26258105-26258774,26259273-26260555,
           26262403-26263499
          Length = 1093

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -2

Query: 676 GC-PARSSSLDHRSCRSLAIVPRCNQACGHCSC 581
           GC P+R+   D   C ++AI     + CGH SC
Sbjct: 425 GCVPSRNPLKDPGDCEAVAIRDTDGEDCGHFSC 457


>07_03_1208 -
           24896905-24896931,24897330-24897341,24898058-24898333,
           24898410-24898466,24898561-24898638,24899112-24899198,
           24899815-24899904,24900012-24900218
          Length = 277

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 312 TRAPPGLIEFWRSASKASKLPRPGKPRRIRLQCPCS 205
           T AP   + F    S+  +LP P   RRI+L+  C+
Sbjct: 16  TAAPTSALAFLPLISQRRRLPSPAPARRIQLRSHCT 51


>06_03_1506 + 30641428-30642168
          Length = 246

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 583 NYSAHTPGYNVGQSPGYGRTGGRGN 657
           +Y+  T GY  G   GYG  GG G+
Sbjct: 222 SYNGGTGGYGEGHGSGYGGGGGHGH 246


>05_03_0491 + 14682895-14683365,14684127-14684656,14684739-14685213
          Length = 491

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -1

Query: 344 RATWSCRWGC 315
           R  WSCRWGC
Sbjct: 457 RCAWSCRWGC 466


>12_02_0064 +
           13104835-13105311,13107731-13108119,13108156-13108286,
           13108378-13108469,13108488-13109264,13109291-13109320
          Length = 631

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +1

Query: 592 AHTPGYNVGQSPGYGRTGGRGNLSEL 669
           A TPGY    SPG+  TG   N S L
Sbjct: 447 AVTPGYTPTPSPGHNETGVESNSSPL 472


>10_01_0168 - 1883380-1883594,1884572-1888325
          Length = 1322

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -1

Query: 245 LVNLGVFGFSVRARFNYFSIHVIVDKIMCIRHFDNILTLSRYHTN 111
           L  L + G S+   F  F  H+ V K++C+   DN+ +L  Y T+
Sbjct: 785 LAELYLVGCSMCEEFPQFC-HLNVLKVLCLTSLDNLASLCSYTTS 828


>01_02_0112 -
           11230202-11230282,11230362-11230469,11230588-11230671,
           11230791-11230920,11231864-11231931,11232412-11232483,
           11232670-11232705
          Length = 192

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/66 (21%), Positives = 26/66 (39%)
 Frame = +1

Query: 439 HLHRLRIHKWI*EY*LGLCKTCFATYQNTSSFHSEKMTPHKYTSTVQSNYSAHTPGYNVG 618
           + HR  + +W  E    LC+ C   ++   +   +K  P     T++ +     P Y   
Sbjct: 13  YAHRGCVQRWCDEKGSTLCEICLQNFEPGYTAPPKKAQPAHVAVTIRESLEVPRPSYEPE 72

Query: 619 QSPGYG 636
            +P  G
Sbjct: 73  DTPLIG 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,685,260
Number of Sequences: 37544
Number of extensions: 338280
Number of successful extensions: 1011
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)