Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021188
         (677 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41262| Best HMM Match : DUF1581 (HMM E-Value=5)                     30   1.5  
SB_24841| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_11521| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_7747| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)                29   4.6  
SB_19085| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  

>SB_41262| Best HMM Match : DUF1581 (HMM E-Value=5)
          Length = 521

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +1

Query: 514 YQNTSSFHSEKMTPHKYTSTVQSNYSAHTPG----YNVGQSPGYGRTGGRGNLSEL 669
           +   SS HS++ TP  ++  + S+Y   TP     YN          G RG  SE+
Sbjct: 325 FSTFSSEHSQQQTPELFSQALFSSYKPMTPRSTDLYNDTSDSRVSTNGSRGRYSEI 380


>SB_24841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 579

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +1

Query: 514 YQNTSSFHSEKMTPHKYTSTVQSNYSAHTPG----YNVGQSPGYGRTGGRGNLSEL 669
           +   SS HS++ TP  ++  + S+Y   TP     YN          G RG  SE+
Sbjct: 383 FSTFSSEHSQQQTPELFSQALFSSYKPMTPRSTDLYNDTSDSRVSTNGSRGRYSEI 438


>SB_11521| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 953

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
 Frame = +1

Query: 490 LCKT-CFATYQNTSSFHSEKMTPHKYTSTVQSNYSAHTPGYNVGQSPGY 633
           LC T C   Y    + ++ +  P   T  V  N + H PG      PGY
Sbjct: 522 LCDTPCTRLYDTPCTGYATRHVPGNTTHHVPGNTTHHVPGNTTHHVPGY 570


>SB_7747| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)
          Length = 413

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 404 PVKCPCLEETQFCPGSWCDHRATWSC 327
           PVK   +   ++  G+WC H + W+C
Sbjct: 243 PVKDTVVVNDRWGSGTWCKHGSVWTC 268


>SB_19085| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 555

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 575 SKATTVPTRLVTTWDNRQATAGPVVEGT*ASW 670
           S+ + VP  ++T W+N Q    P VE    SW
Sbjct: 511 SRHSQVPKAVLTIWENGQGGLSPAVETGFRSW 542


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,359,701
Number of Sequences: 59808
Number of extensions: 416678
Number of successful extensions: 1330
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1330
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)