Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021188
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical ...    31   1.00 
AF040647-10|AAB94993.1|  124|Caenorhabditis elegans Hypothetical...    30   1.3  
AF099919-13|AAC68798.1|  636|Caenorhabditis elegans Hypothetical...    29   2.3  
U97005-13|AAB52290.1|  868|Caenorhabditis elegans Hypothetical p...    28   5.3  
U97005-12|AAB52289.1| 1121|Caenorhabditis elegans Hypothetical p...    28   5.3  
Z68303-8|CAA92640.2|  273|Caenorhabditis elegans Hypothetical pr...    28   7.0  
U12966-6|AAM48533.1|  783|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical
           protein M01E10.2 protein.
          Length = 1286

 Score = 30.7 bits (66), Expect = 1.00
 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
 Frame = +2

Query: 470 SRNISSDYAKPASQLTKTLAHSTQRR*LRTNIRVPSKATTVPTRLVTT--WDNRQATAGP 643
           S +IS  +  P +Q   T    T     R  + V S  TT P R +TT  W      A P
Sbjct: 270 SEDISESHTTPPTQTPPTQTPPTTTTTRRVTVVVTSPTTTTPRRTITTRIWTTTTTQAPP 329


>AF040647-10|AAB94993.1|  124|Caenorhabditis elegans Hypothetical
           protein F54D12.2 protein.
          Length = 124

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = -1

Query: 212 RARFNYFSIHVIVDKIMCIRHFDNILTLSRYHTNFQKTPQ 93
           ++  NY ++  + DK+ C+++F ++ T S  +T  Q T Q
Sbjct: 68  KSLLNYIAVKYVYDKVSCLKNFASLFTSSTLYT--QSTDQ 105


>AF099919-13|AAC68798.1|  636|Caenorhabditis elegans Hypothetical
           protein F40G9.1 protein.
          Length = 636

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -3

Query: 171 QNNVYSTFR*YLDTLEISHKFSKNTSKPFFELKISI 64
           +N  +S F  + +T++  H+ S+N  K FF LKI I
Sbjct: 436 KNPHFSEF--FFETIDFEHENSQNALKKFFSLKIDI 469


>U97005-13|AAB52290.1|  868|Caenorhabditis elegans Hypothetical
           protein F19F10.11b protein.
          Length = 868

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/24 (50%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
 Frame = -3

Query: 429 RLPDELR-RPGEVPLPRGDPVLPG 361
           +LP+E++ +PGE+ L   DP+LPG
Sbjct: 31  QLPEEIKLKPGEMILVPDDPMLPG 54


>U97005-12|AAB52289.1| 1121|Caenorhabditis elegans Hypothetical
           protein F19F10.11a protein.
          Length = 1121

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/24 (50%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
 Frame = -3

Query: 429 RLPDELR-RPGEVPLPRGDPVLPG 361
           +LP+E++ +PGE+ L   DP+LPG
Sbjct: 31  QLPEEIKLKPGEMILVPDDPMLPG 54


>Z68303-8|CAA92640.2|  273|Caenorhabditis elegans Hypothetical
           protein ZK809.7 protein.
          Length = 273

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 661 SSSLDHRSCRSLAIVPRCNQACGHCSCF 578
           SS ++   C   +++P   Q CGH +C+
Sbjct: 211 SSDIECVVCDKPSVIPMVGQKCGHVACY 238


>U12966-6|AAM48533.1|  783|Caenorhabditis elegans Hypothetical
           protein F54D8.6 protein.
          Length = 783

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 426 LPDELRRPGEVPLPRGDPVLPGE 358
           +PDELR  G VP+    P +P E
Sbjct: 353 IPDELRNLGAVPVVTSIPTIPNE 375


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,313,256
Number of Sequences: 27780
Number of extensions: 301645
Number of successful extensions: 1047
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)