Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021188
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.7  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   2.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   4.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.2  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   8.2  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   8.2  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   8.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.2  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 143 NILTLSRYHTNFQKTPQNRFLNLKFRFESNVIRKTENL 30
           +I  L R  T + K P    +   + F+S+VI + +NL
Sbjct: 145 SIAVLYRPDTKYMKFPAIYEIYPNYFFDSSVIEEAQNL 182


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 143 NILTLSRYHTNFQKTPQNRFLNLKFRFESNVIRKTENL 30
           +I  L R  T + K P    +   + F+S+VI + +NL
Sbjct: 145 SIAVLYRPDTKYMKFPAIYEIYPNYFFDSSVIEEAQNL 182


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 553 PHKYTSTVQSNYSAHTPGYNVGQSPGY 633
           P ++   VQ+ Y  H PG+     P Y
Sbjct: 199 PQQHGLGVQNGYGRHLPGHAQMGRPSY 225


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = +1

Query: 250 WKFRCFACRPP 282
           W+  C AC PP
Sbjct: 385 WQMSCVACSPP 395


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +1

Query: 331  DHVARWSHQLPGQNWVSSRQGHFTGPSQLVRQPEFPHLH 447
            +H  R +  +PG N +++     +G S+  R+P   H++
Sbjct: 1297 NHAYRDAVTVPGNNLIATNTTVSSGSSEDHRRPLSEHIY 1335


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 541 EKMTPHKYTSTVQSNYSAHTPGY 609
           EK   HK  S++ +NY+ +   Y
Sbjct: 74  EKSKEHKIISSLSNNYNYNNNNY 96


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 541 EKMTPHKYTSTVQSNYSAHTPGY 609
           EK   HK  S++ +NY+ +   Y
Sbjct: 74  EKSKEHKIISSLSNNYNYNNNNY 96


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 541 EKMTPHKYTSTVQSNYSAHTPGY 609
           EK   HK  S++ +NY+ +   Y
Sbjct: 74  EKSKEHKIISSLSNNYNYNNNNY 96


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -3

Query: 138 LDTLEISHKFSKNTSKPF 85
           LDT E  H F   T  PF
Sbjct: 919 LDTYESVHSFPTETGLPF 936


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,846
Number of Sequences: 438
Number of extensions: 3832
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)