Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021188
         (677 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04700.1 68418.m00478 hypothetical protein                          29   2.1  
At2g04135.1 68415.m00397 hypothetical protein                          29   2.1  
At5g49610.1 68418.m06139 F-box family protein contains Pfam PF00...    27   8.6  
At4g27480.1 68417.m03948 glycosyltransferase family 14 protein /...    27   8.6  

>At5g04700.1 68418.m00478 hypothetical protein
          Length = 669

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 20/77 (25%), Positives = 32/77 (41%)
 Frame = +1

Query: 373 WVSSRQGHFTGPSQLVRQPEFPHLHRLRIHKWI*EY*LGLCKTCFATYQNTSSFHSEKMT 552
           ++   QG   G  ++V+  +F + H   + +WI  Y   L K C             +MT
Sbjct: 81  YIQLSQGISQGRVEIVK--DFLNHHPDSVDEWINLYETPLLKACACGKPEIVKELLRRMT 138

Query: 553 PHKYTSTVQSNYSAHTP 603
           P +    +  N S HTP
Sbjct: 139 PEQMLPKMSQNASYHTP 155


>At2g04135.1 68415.m00397 hypothetical protein
          Length = 285

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
 Frame = +1

Query: 526 SSFHSEKM---TPHKYTSTVQSNYSAH--TPGYNVGQSPGYGRTGGRG 654
           S+FH+  +   T ++     ++N +++    GYN G+  GYGR  GRG
Sbjct: 144 STFHANNIVLQTQYRSAPFPEANVTSYGQESGYNRGRGRGYGRDRGRG 191


>At5g49610.1 68418.m06139 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
           protein interaction domain; similar to unknown protein
           (gb|AAF30317.1)
          Length = 359

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 137 LTLSRYHTNFQKTPQNRFLNLKFRFESNVIRK 42
           + L+ YH +F + P   F+ L F  ESN  RK
Sbjct: 157 VVLAGYHRSFGQRPDGSFICLVFDSESNKWRK 188


>At4g27480.1 68417.m03948 glycosyltransferase family 14 protein /
           core-2/I-branching enzyme family protein contains Pfam
           profile: PF02485 Core-2/I-Branching enzyme
          Length = 421

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -1

Query: 161 CIRHFDNI-LTLSRYHTNFQKTPQNRF 84
           CI  +DN+  TL  Y+TNF  TP+  F
Sbjct: 270 CIWGWDNLPRTLLMYYTNFLSTPEGYF 296


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,433,575
Number of Sequences: 28952
Number of extensions: 268488
Number of successful extensions: 790
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)