Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021187
         (695 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    25   0.45 
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    25   0.45 
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    25   0.45 
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    25   0.45 
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    25   0.45 
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    25   0.45 
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           25   0.45 
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    25   0.45 
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    25   0.45 
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    23   1.8  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    22   4.2  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   5.5  
AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esteras...    22   5.5  
AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esteras...    22   5.5  
AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esteras...    22   5.5  
AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esteras...    22   5.5  
AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esteras...    22   5.5  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   5.5  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   5.5  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 207 EAPRSTTWPSSHVSLRCGTFRTGSEPQHGLSSDGTPAHDRAPGSS 341
           ++P + T PS+       T  TG      LS++G P     P S+
Sbjct: 87  QSPNTQTHPSASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLST 131


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 207 EAPRSTTWPSSHVSLRCGTFRTGSEPQHGLSSDGTPAHDRAPGSS 341
           ++P + T PS+       T  TG      LS++G P     P S+
Sbjct: 87  QSPNTQTHPSASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLST 131


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 207 EAPRSTTWPSSHVSLRCGTFRTGSEPQHGLSSDGTPAHDRAPGSS 341
           ++P + T PS+       T  TG      LS++G P     P S+
Sbjct: 87  QSPNTQTHPSASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLST 131


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 207 EAPRSTTWPSSHVSLRCGTFRTGSEPQHGLSSDGTPAHDRAPGSS 341
           ++P + T PS+       T  TG      LS++G P     P S+
Sbjct: 87  QSPNTQTHPSASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLST 131


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 207 EAPRSTTWPSSHVSLRCGTFRTGSEPQHGLSSDGTPAHDRAPGSS 341
           ++P + T PS+       T  TG      LS++G P     P S+
Sbjct: 87  QSPNTQTHPSASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLST 131


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 207 EAPRSTTWPSSHVSLRCGTFRTGSEPQHGLSSDGTPAHDRAPGSS 341
           ++P + T PS+       T  TG      LS++G P     P S+
Sbjct: 43  QSPNTQTHPSASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLST 87


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 207 EAPRSTTWPSSHVSLRCGTFRTGSEPQHGLSSDGTPAHDRAPGSS 341
           ++P + T PS+       T  TG      LS++G P     P S+
Sbjct: 87  QSPNTQTHPSASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLST 131


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 207 EAPRSTTWPSSHVSLRCGTFRTGSEPQHGLSSDGTPAHDRAPGSS 341
           ++P + T PS+       T  TG      LS++G P     P S+
Sbjct: 87  QSPNTQTHPSASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLST 131


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 207 EAPRSTTWPSSHVSLRCGTFRTGSEPQHGLSSDGTPAHDRAPGSS 341
           ++P + T PS+       T  TG      LS++G P     P S+
Sbjct: 87  QSPNTQTHPSASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLST 131


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -3

Query: 558 ASGASAVPWPRARPLPPHHSL---PGAAHERRARWD 460
           AS  S  P P   P PP  S+    G+A+++ + +D
Sbjct: 310 ASPYSGTPTPMMSPAPPQDSMGYSMGSAYDQSSAYD 345


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 519 PLPPHHSLPGAAH 481
           P PP+H L G+ H
Sbjct: 72  PYPPNHPLSGSKH 84


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 12/67 (17%)
 Frame = +1

Query: 1   ERTSSLLGLTPTPSDTERNPQLS---SVSYPQG---HSTASS------HRRSPTEQTGTI 144
           E+   L  ++P  S    N +LS   + S P G   H  A S      +R SPT  T   
Sbjct: 201 EKKIGLSKISPKESQDAANVKLSPKSASSLPPGNNIHGMAPSVMYPHLNRSSPTTATAIA 260

Query: 145 SATIYIR 165
           SAT+ I+
Sbjct: 261 SATVTIQ 267


>AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +2

Query: 608 PTSHPRIGERRRSRPSDTEP 667
           P + P +GE R   P   EP
Sbjct: 46  PYAQPPVGENRFEAPKPVEP 65


>AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +2

Query: 608 PTSHPRIGERRRSRPSDTEP 667
           P + P +GE R   P   EP
Sbjct: 46  PYAQPPVGENRFEAPKPVEP 65


>AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +2

Query: 608 PTSHPRIGERRRSRPSDTEP 667
           P + P +GE R   P   EP
Sbjct: 46  PYAQPPVGENRFEAPKPVEP 65


>AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +2

Query: 608 PTSHPRIGERRRSRPSDTEP 667
           P + P +GE R   P   EP
Sbjct: 46  PYAQPPVGENRFEAPKPVEP 65


>AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +2

Query: 608 PTSHPRIGERRRSRPSDTEP 667
           P + P +GE R   P   EP
Sbjct: 46  PYAQPPVGENRFEAPKPVEP 65


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 12/67 (17%)
 Frame = +1

Query: 1   ERTSSLLGLTPTPSDTERNPQLS---SVSYPQG---HSTASS------HRRSPTEQTGTI 144
           E+   L  ++P  S    N +LS   + S P G   H  A S      +R SPT  T   
Sbjct: 149 EKKIGLSKISPKESQDAANVKLSPKSASSLPPGNNIHGMAPSVMYPHLNRSSPTTATAIA 208

Query: 145 SATIYIR 165
           SAT+ I+
Sbjct: 209 SATVTIQ 215


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 12/67 (17%)
 Frame = +1

Query: 1   ERTSSLLGLTPTPSDTERNPQLS---SVSYPQG---HSTASS------HRRSPTEQTGTI 144
           E+   L  ++P  S    N +LS   + S P G   H  A S      +R SPT  T   
Sbjct: 332 EKKIGLSKISPKESQDAANVKLSPKSASSLPPGNNIHGMAPSVMYPHLNRSSPTTATAIA 391

Query: 145 SATIYIR 165
           SAT+ I+
Sbjct: 392 SATVTIQ 398


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,959
Number of Sequences: 336
Number of extensions: 4194
Number of successful extensions: 35
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)