Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021187
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    31   0.12 
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    29   0.84 
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    27   2.6  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    27   3.4  
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    27   3.4  
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb...    26   4.5  
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr...    26   4.5  
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    26   4.5  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    26   5.9  
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    25   7.8  
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met...    25   7.8  
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo...    25   7.8  

>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +1

Query: 13  SLLGLTPTPSDTERNPQLSSVSYPQGHSTASSHRRSPTEQTGTISATIYI-RGPRLLRAL 189
           SL   +P+ S+   N QLS +S       A    +SP   T + SATI   R P L RA 
Sbjct: 393 SLKSKSPSVSNILSN-QLSPISSANNDVMARLQPKSPIPATKSYSATIQTPRSPSLRRAD 451

Query: 190 SSDHRQKHP 216
           S+ H  K P
Sbjct: 452 STSHIIKVP 460


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +1

Query: 43  DTERNPQLSSVSYPQGHSTASSHRRSPTEQTGTISATIYIRGPRLLRALSSDH 201
           +T+ N  LS + +   H T SSH +  T       +  ++ GP+L +AL++ H
Sbjct: 168 NTQANKLLSILLW---HPTISSHIQPETATVFIEQSLNFLEGPKLTKALAAQH 217


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 52  RNPQLSSVSYPQGHSTASSHRRSPTEQT 135
           R P  SS  +   HS +++H +SP  Q+
Sbjct: 63  RQPTESSTHFQSSHSVSNAHNQSPLNQS 90


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 134  VCSVGDRLWLDAVECPCGYDTED 66
            V S+ + L+ + VEC CGY+  D
Sbjct: 1269 VKSLKETLYANTVECDCGYEYSD 1291


>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
 Frame = -3

Query: 522 RPLPPHH-SLPGAAHERRARWDEAPLDKF*ARFMLSRLVQSLAQLLVGTP*IGAVVAPYL 346
           RP PP   SLP      +  WD   L++F  R  L+   Q L+  L        V++   
Sbjct: 60  RPRPPSATSLPALLSLFQEEWDSVALEQFELRRNLTETKQELSTALYSLDAALRVISRLT 119

Query: 345 RRSSPARD 322
           +    AR+
Sbjct: 120 KERDEARE 127


>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 148 PILCQSARWVIACGWTRWSV 89
           PI+C S +WV+AC  +++ V
Sbjct: 225 PIVCVSPKWVLACYSSKYLV 244


>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/42 (35%), Positives = 17/42 (40%)
 Frame = +1

Query: 196 DHRQKHPEALRGHLHMSHYAAVHLEPAASLSTDSAVMALRRM 321
           DH QKH E    HL  +      + P AS     A  A  RM
Sbjct: 537 DHYQKHVEPSSSHLQTAAAYENSISPFASFRKKEAERAYSRM 578


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 37  PSDTERNPQLSSVSYPQGHSTASSHRRSPT 126
           PS+T ++ Q ++V +P+  +T S+   SPT
Sbjct: 276 PSETVKSEQETAVEHPKPTATTSAPSASPT 305


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = +1

Query: 28  TP-TPSDTERNPQLSSVSYPQGHSTASSHRRSPTEQTGTISATIYIRGPRLLRALSSDHR 204
           TP +PS      Q    SY Q H+  S +++SP+       +++Y + P     + +   
Sbjct: 328 TPYSPSVPFGTYQEKEKSYSQDHAELSYYQQSPSMMPPYDRSSVYFQQPLSRTDVPNQSF 387

Query: 205 QKHPEALRG 231
           Q++P  + G
Sbjct: 388 QQYPTTVDG 396


>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 18/72 (25%), Positives = 27/72 (37%)
 Frame = +1

Query: 34  TPSDTERNPQLSSVSYPQGHSTASSHRRSPTEQTGTISATIYIRGPRLLRALSSDHRQKH 213
           TP+    N ++ S++ P   S  +    SPT +   +S          L   SS      
Sbjct: 134 TPTTASENKKIESITIPDHASVYNDLPLSPTVKHSFVSPVSGDYSDSPLEPSSSSSFSVP 193

Query: 214 PEALRGHLHMSH 249
           PE+L   L   H
Sbjct: 194 PESLNPTLSFQH 205


>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
           Met11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = -3

Query: 591 LPLLAEYEIFRASGASAVPWPRARPLPPHHSLPGAAHERRARWDEAPLDK 442
           +PL +      A   + V    A+ L  HH +P   H      D+A +DK
Sbjct: 45  MPLFSSVTWGTAGSTAEVSIYLAKMLEQHHKIPACLHLTCTNVDKAIIDK 94


>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -1

Query: 458 KRHWISFKLASCSVALSKAWRSSLSAPRKLVPLSLHISVGAPRRAIMR 315
           K+H I   L    ++L K W S +    KL  +  H   GA R  +++
Sbjct: 284 KKHSIKSTLVVAPLSLIKQWESEVQTKSKLTAIVYH---GASRYKLLK 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,114,169
Number of Sequences: 5004
Number of extensions: 67066
Number of successful extensions: 238
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)