Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021187
(695 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK096917-1|BAC04894.1| 129|Homo sapiens protein ( Homo sapiens ... 37 0.060
Y15065-1|CAA75348.1| 844|Homo sapiens voltage gated potassium c... 33 0.97
AL353658-7|CAH72960.1| 868|Homo sapiens KCNQ2 protein. 33 0.97
AL353658-6|CAH72959.1| 854|Homo sapiens KCNQ2 protein. 33 0.97
AL353658-5|CAH72961.1| 842|Homo sapiens KCNQ2 protein. 33 0.97
AL353658-4|CAH72962.1| 880|Homo sapiens KCNQ2 protein. 33 0.97
AL353658-3|CAH72958.1| 872|Homo sapiens KCNQ2 protein. 33 0.97
AL121829-7|CAI95745.1| 868|Homo sapiens KCNQ2 protein. 33 0.97
AL121829-6|CAI95744.1| 854|Homo sapiens KCNQ2 protein. 33 0.97
AL121829-5|CAI95741.1| 842|Homo sapiens KCNQ2 protein. 33 0.97
AL121829-4|CAI95742.1| 880|Homo sapiens KCNQ2 protein. 33 0.97
AL121829-3|CAI95740.1| 872|Homo sapiens KCNQ2 protein. 33 0.97
AF110020-1|AAD16988.1| 841|Homo sapiens potassium channel protein. 33 0.97
AF074247-1|AAC25921.1| 854|Homo sapiens neuronal delayed-rectif... 33 0.97
AF033348-1|AAB97315.1| 872|Homo sapiens potassium channel protein. 33 0.97
BC051719-1|AAH51719.1| 304|Homo sapiens B3GALT6 protein protein. 32 1.7
AY050570-1|AAL11442.1| 329|Homo sapiens beta-1,3-galactosyltran... 32 2.2
AL162741-12|CAI23255.1| 329|Homo sapiens UDP-Gal:betaGal beta 1... 32 2.2
BC012025-1|AAH12025.1| 231|Homo sapiens MIOX protein protein. 31 3.9
AL096767-15|CAO03465.1| 231|Homo sapiens myo-inositol oxygenase... 31 3.9
U58917-1|AAB99730.1| 866|Homo sapiens IL-17 receptor protein. 31 5.2
CT841520-1|CAJ86450.1| 866|Homo sapiens IL17R protein. 31 5.2
BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein. 31 5.2
BC011624-1|AAH11624.1| 866|Homo sapiens interleukin 17 receptor... 31 5.2
AY003835-1|AAK11802.1| 100|Homo sapiens immunoglobulin heavy ch... 31 5.2
AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator su... 31 5.2
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro... 31 5.2
AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein pro... 31 5.2
AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein pro... 31 5.2
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein. 31 5.2
Y18448-1|CAA77176.1| 3851|Homo sapiens Bassoon protein protein. 30 6.9
AL133561-1|CAB63715.1| 580|Homo sapiens hypothetical protein pr... 30 6.9
AF052224-1|AAC83555.1| 3926|Homo sapiens neuronal double zinc fi... 30 6.9
D80010-1|BAA11505.1| 899|Homo sapiens KIAA0188 protein. 30 9.1
BC047235-1|AAH47235.1| 540|Homo sapiens upstream binding protei... 30 9.1
BC030537-1|AAH30537.1| 890|Homo sapiens lipin 1 protein. 30 9.1
AY393158-1|AAS86092.1| 166|Homo sapiens immunoglobulin heavy ch... 30 9.1
AL358216-1|CAH69849.1| 221|Homo sapiens novel protein protein. 30 9.1
AK096000-1|BAC04668.1| 221|Homo sapiens protein ( Homo sapiens ... 30 9.1
AK023274-1|BAB14501.1| 503|Homo sapiens protein ( Homo sapiens ... 30 9.1
AF198487-1|AAF32274.1| 540|Homo sapiens transcription factor LB... 30 9.1
AC012456-1|AAY14695.1| 890|Homo sapiens unknown protein. 30 9.1
>AK096917-1|BAC04894.1| 129|Homo sapiens protein ( Homo sapiens
cDNA FLJ39598 fis, clone SKNSH2002866. ).
Length = 129
Score = 37.1 bits (82), Expect = 0.060
Identities = 37/118 (31%), Positives = 48/118 (40%), Gaps = 6/118 (5%)
Frame = +2
Query: 356 ATTAPIYGVPTRSCAKLWTRRLSMKRA*NLSNGASS---HRARLSWAAPGREWCGGKGR- 523
+ TA G P+R R S+ + + A S H A P + G+G
Sbjct: 11 SVTAGAPGSPSRRDVSTLRRHCSLHQQLASAVAAQSFAEHPATWPSVNPEKPRDSGRGDW 70
Query: 524 ALGHGTA-EAPDARNISYSASRGRVHSEQPTSHPRIGERRRSRP-SDTEPLPAREARR 691
LG G + P AR A+RGR E PR+G R R RP + PLP RR
Sbjct: 71 GLGPGNPKDVPAARKGVTGATRGRGRRESGPRKPRVGARGRRRPRALLRPLPETPPRR 128
>Y15065-1|CAA75348.1| 844|Homo sapiens voltage gated potassium
channel protein.
Length = 844
Score = 33.1 bits (72), Expect = 0.97
Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Frame = +3
Query: 180 SGPIK*PPAEAPRSTTW-PSSHVSLRCGTFRTGSEPQHG--LSSDGTPAHDRA----PGS 338
S P PP + P ST+W P SH GT G HG + PAH+R+ G
Sbjct: 674 SAPPAAPPVQCPPSTSWQPQSHPRQGHGTSPVG---DHGSLVRIPPPPAHERSLSAYGGG 730
Query: 339 SDGDMERQRHQFT-GCR 386
+ ME R + T GCR
Sbjct: 731 NRASMEFLRQEDTPGCR 747
>AL353658-7|CAH72960.1| 868|Homo sapiens KCNQ2 protein.
Length = 868
Score = 33.1 bits (72), Expect = 0.97
Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Frame = +3
Query: 180 SGPIK*PPAEAPRSTTW-PSSHVSLRCGTFRTGSEPQHG--LSSDGTPAHDRA----PGS 338
S P PP + P ST+W P SH GT G HG + PAH+R+ G
Sbjct: 698 SAPPAAPPVQCPPSTSWQPQSHPRQGHGTSPVG---DHGSLVRIPPPPAHERSLSAYGGG 754
Query: 339 SDGDMERQRHQFT-GCR 386
+ ME R + T GCR
Sbjct: 755 NRASMEFLRQEDTPGCR 771
>AL353658-6|CAH72959.1| 854|Homo sapiens KCNQ2 protein.
Length = 854
Score = 33.1 bits (72), Expect = 0.97
Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Frame = +3
Query: 180 SGPIK*PPAEAPRSTTW-PSSHVSLRCGTFRTGSEPQHG--LSSDGTPAHDRA----PGS 338
S P PP + P ST+W P SH GT G HG + PAH+R+ G
Sbjct: 684 SAPPAAPPVQCPPSTSWQPQSHPRQGHGTSPVG---DHGSLVRIPPPPAHERSLSAYGGG 740
Query: 339 SDGDMERQRHQFT-GCR 386
+ ME R + T GCR
Sbjct: 741 NRASMEFLRQEDTPGCR 757
>AL353658-5|CAH72961.1| 842|Homo sapiens KCNQ2 protein.
Length = 842
Score = 33.1 bits (72), Expect = 0.97
Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Frame = +3
Query: 180 SGPIK*PPAEAPRSTTW-PSSHVSLRCGTFRTGSEPQHG--LSSDGTPAHDRA----PGS 338
S P PP + P ST+W P SH GT G HG + PAH+R+ G
Sbjct: 672 SAPPAAPPVQCPPSTSWQPQSHPRQGHGTSPVG---DHGSLVRIPPPPAHERSLSAYGGG 728
Query: 339 SDGDMERQRHQFT-GCR 386
+ ME R + T GCR
Sbjct: 729 NRASMEFLRQEDTPGCR 745
>AL353658-4|CAH72962.1| 880|Homo sapiens KCNQ2 protein.
Length = 880
Score = 33.1 bits (72), Expect = 0.97
Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Frame = +3
Query: 180 SGPIK*PPAEAPRSTTW-PSSHVSLRCGTFRTGSEPQHG--LSSDGTPAHDRA----PGS 338
S P PP + P ST+W P SH GT G HG + PAH+R+ G
Sbjct: 710 SAPPAAPPVQCPPSTSWQPQSHPRQGHGTSPVG---DHGSLVRIPPPPAHERSLSAYGGG 766
Query: 339 SDGDMERQRHQFT-GCR 386
+ ME R + T GCR
Sbjct: 767 NRASMEFLRQEDTPGCR 783
>AL353658-3|CAH72958.1| 872|Homo sapiens KCNQ2 protein.
Length = 872
Score = 33.1 bits (72), Expect = 0.97
Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Frame = +3
Query: 180 SGPIK*PPAEAPRSTTW-PSSHVSLRCGTFRTGSEPQHG--LSSDGTPAHDRA----PGS 338
S P PP + P ST+W P SH GT G HG + PAH+R+ G
Sbjct: 702 SAPPAAPPVQCPPSTSWQPQSHPRQGHGTSPVG---DHGSLVRIPPPPAHERSLSAYGGG 758
Query: 339 SDGDMERQRHQFT-GCR 386
+ ME R + T GCR
Sbjct: 759 NRASMEFLRQEDTPGCR 775
>AL121829-7|CAI95745.1| 868|Homo sapiens KCNQ2 protein.
Length = 868
Score = 33.1 bits (72), Expect = 0.97
Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Frame = +3
Query: 180 SGPIK*PPAEAPRSTTW-PSSHVSLRCGTFRTGSEPQHG--LSSDGTPAHDRA----PGS 338
S P PP + P ST+W P SH GT G HG + PAH+R+ G
Sbjct: 698 SAPPAAPPVQCPPSTSWQPQSHPRQGHGTSPVG---DHGSLVRIPPPPAHERSLSAYGGG 754
Query: 339 SDGDMERQRHQFT-GCR 386
+ ME R + T GCR
Sbjct: 755 NRASMEFLRQEDTPGCR 771
>AL121829-6|CAI95744.1| 854|Homo sapiens KCNQ2 protein.
Length = 854
Score = 33.1 bits (72), Expect = 0.97
Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Frame = +3
Query: 180 SGPIK*PPAEAPRSTTW-PSSHVSLRCGTFRTGSEPQHG--LSSDGTPAHDRA----PGS 338
S P PP + P ST+W P SH GT G HG + PAH+R+ G
Sbjct: 684 SAPPAAPPVQCPPSTSWQPQSHPRQGHGTSPVG---DHGSLVRIPPPPAHERSLSAYGGG 740
Query: 339 SDGDMERQRHQFT-GCR 386
+ ME R + T GCR
Sbjct: 741 NRASMEFLRQEDTPGCR 757
>AL121829-5|CAI95741.1| 842|Homo sapiens KCNQ2 protein.
Length = 842
Score = 33.1 bits (72), Expect = 0.97
Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Frame = +3
Query: 180 SGPIK*PPAEAPRSTTW-PSSHVSLRCGTFRTGSEPQHG--LSSDGTPAHDRA----PGS 338
S P PP + P ST+W P SH GT G HG + PAH+R+ G
Sbjct: 672 SAPPAAPPVQCPPSTSWQPQSHPRQGHGTSPVG---DHGSLVRIPPPPAHERSLSAYGGG 728
Query: 339 SDGDMERQRHQFT-GCR 386
+ ME R + T GCR
Sbjct: 729 NRASMEFLRQEDTPGCR 745
>AL121829-4|CAI95742.1| 880|Homo sapiens KCNQ2 protein.
Length = 880
Score = 33.1 bits (72), Expect = 0.97
Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Frame = +3
Query: 180 SGPIK*PPAEAPRSTTW-PSSHVSLRCGTFRTGSEPQHG--LSSDGTPAHDRA----PGS 338
S P PP + P ST+W P SH GT G HG + PAH+R+ G
Sbjct: 710 SAPPAAPPVQCPPSTSWQPQSHPRQGHGTSPVG---DHGSLVRIPPPPAHERSLSAYGGG 766
Query: 339 SDGDMERQRHQFT-GCR 386
+ ME R + T GCR
Sbjct: 767 NRASMEFLRQEDTPGCR 783
>AL121829-3|CAI95740.1| 872|Homo sapiens KCNQ2 protein.
Length = 872
Score = 33.1 bits (72), Expect = 0.97
Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Frame = +3
Query: 180 SGPIK*PPAEAPRSTTW-PSSHVSLRCGTFRTGSEPQHG--LSSDGTPAHDRA----PGS 338
S P PP + P ST+W P SH GT G HG + PAH+R+ G
Sbjct: 702 SAPPAAPPVQCPPSTSWQPQSHPRQGHGTSPVG---DHGSLVRIPPPPAHERSLSAYGGG 758
Query: 339 SDGDMERQRHQFT-GCR 386
+ ME R + T GCR
Sbjct: 759 NRASMEFLRQEDTPGCR 775
>AF110020-1|AAD16988.1| 841|Homo sapiens potassium channel protein.
Length = 841
Score = 33.1 bits (72), Expect = 0.97
Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Frame = +3
Query: 180 SGPIK*PPAEAPRSTTW-PSSHVSLRCGTFRTGSEPQHG--LSSDGTPAHDRA----PGS 338
S P PP + P ST+W P SH GT G HG + PAH+R+ G
Sbjct: 671 SAPPAAPPVQCPPSTSWQPQSHPRQGHGTSPVG---DHGSLVRIPPPPAHERSLSAYGGG 727
Query: 339 SDGDMERQRHQFT-GCR 386
+ ME R + T GCR
Sbjct: 728 NRASMEFLRQEDTPGCR 744
>AF074247-1|AAC25921.1| 854|Homo sapiens neuronal delayed-rectifier
voltage-gated potassium channel splice variant protein.
Length = 854
Score = 33.1 bits (72), Expect = 0.97
Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Frame = +3
Query: 180 SGPIK*PPAEAPRSTTW-PSSHVSLRCGTFRTGSEPQHG--LSSDGTPAHDRA----PGS 338
S P PP + P ST+W P SH GT G HG + PAH+R+ G
Sbjct: 684 SAPPAAPPVQCPPSTSWQPQSHPRQGHGTSPVG---DHGSLVRIPPPPAHERSLSAYGGG 740
Query: 339 SDGDMERQRHQFT-GCR 386
+ ME R + T GCR
Sbjct: 741 NRASMEFLRQEDTPGCR 757
>AF033348-1|AAB97315.1| 872|Homo sapiens potassium channel protein.
Length = 872
Score = 33.1 bits (72), Expect = 0.97
Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Frame = +3
Query: 180 SGPIK*PPAEAPRSTTW-PSSHVSLRCGTFRTGSEPQHG--LSSDGTPAHDRA----PGS 338
S P PP + P ST+W P SH GT G HG + PAH+R+ G
Sbjct: 702 SAPPAAPPVQCPPSTSWQPQSHPRQGHGTSPVG---DHGSLVRIPPPPAHERSLSAYGGG 758
Query: 339 SDGDMERQRHQFT-GCR 386
+ ME R + T GCR
Sbjct: 759 NRASMEFLRQEDTPGCR 775
>BC051719-1|AAH51719.1| 304|Homo sapiens B3GALT6 protein protein.
Length = 304
Score = 32.3 bits (70), Expect = 1.7
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 322 IARRGAPTEIWSDNGTNLRGADKELRQALDKATEHEASLKLIQ 450
+ARRGAP ++W+ G E R+AL++ L L++
Sbjct: 56 LARRGAPGDVWARFAVGTAGLGAEERRALEREQARHGDLLLLR 98
>AY050570-1|AAL11442.1| 329|Homo sapiens
beta-1,3-galactosyltransferase-6 protein.
Length = 329
Score = 31.9 bits (69), Expect = 2.2
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 322 IARRGAPTEIWSDNGTNLRGADKELRQALDKATEHEASLKLI 447
+ARRGAP ++W+ G E R+AL++ L L+
Sbjct: 81 LARRGAPGDVWARFAVGTAGLGAEERRALEREQARHGDLLLL 122
>AL162741-12|CAI23255.1| 329|Homo sapiens UDP-Gal:betaGal beta
1,3-galactosyltransferase polypeptide 6 protein.
Length = 329
Score = 31.9 bits (69), Expect = 2.2
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 322 IARRGAPTEIWSDNGTNLRGADKELRQALDKATEHEASLKLI 447
+ARRGAP ++W+ G E R+AL++ L L+
Sbjct: 81 LARRGAPGDVWARFAVGTAGLGAEERRALEREQARHGDLLLL 122
>BC012025-1|AAH12025.1| 231|Homo sapiens MIOX protein protein.
Length = 231
Score = 31.1 bits (67), Expect = 3.9
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +1
Query: 10 SSLLGLTPTPSDTERNPQLSSVSYPQGHSTASSHRRSPTEQTGTISATI 156
S L TP+PSD R P S + P +T +S + +G IS T+
Sbjct: 147 SGLSSATPSPSDAVRRPPWFSAT-PPSRTTLTSRILDTAQSSGCISPTV 194
>AL096767-15|CAO03465.1| 231|Homo sapiens myo-inositol oxygenase
protein.
Length = 231
Score = 31.1 bits (67), Expect = 3.9
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +1
Query: 10 SSLLGLTPTPSDTERNPQLSSVSYPQGHSTASSHRRSPTEQTGTISATI 156
S L TP+PSD R P S + P +T +S + +G IS T+
Sbjct: 147 SGLSSATPSPSDAVRRPPWFSAT-PPSRTTLTSRILDTAQSSGCISPTV 194
>U58917-1|AAB99730.1| 866|Homo sapiens IL-17 receptor protein.
Length = 866
Score = 30.7 bits (66), Expect = 5.2
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 492 LGENGAAVKAALSATEQPR-RPTPEIFHTLLAEAE 593
+GE G A A L QPR +P P+ HTL+ AE
Sbjct: 639 VGEEGGAAVAKLEPHLQPRGQPAPQPLHTLVLAAE 673
>CT841520-1|CAJ86450.1| 866|Homo sapiens IL17R protein.
Length = 866
Score = 30.7 bits (66), Expect = 5.2
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 492 LGENGAAVKAALSATEQPR-RPTPEIFHTLLAEAE 593
+GE G A A L QPR +P P+ HTL+ AE
Sbjct: 639 VGEEGGAAVAKLEPHLQPRGQPAPQPLHTLVLAAE 673
>BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein.
Length = 1022
Score = 30.7 bits (66), Expect = 5.2
Identities = 34/120 (28%), Positives = 45/120 (37%), Gaps = 4/120 (3%)
Frame = +2
Query: 344 RRYGATTAPIYGVPTRSCAKLWTRR-LSMKRA*NLSNGASSHRARLSWAAPGREWCGGKG 520
RR G + +P RS ++ T+R S R+ S+ R S +P R
Sbjct: 479 RRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRS-RSPQRRGRSRSP 537
Query: 521 RALGHGTAEAPDARNISYSASRGRVHSEQPTSHPRIGER---RRSRPSDTEPLPAREARR 691
+ G + R S SA RGR HS P + R R RR R P R R
Sbjct: 538 QRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSR 597
>BC011624-1|AAH11624.1| 866|Homo sapiens interleukin 17 receptor A
protein.
Length = 866
Score = 30.7 bits (66), Expect = 5.2
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 492 LGENGAAVKAALSATEQPR-RPTPEIFHTLLAEAE 593
+GE G A A L QPR +P P+ HTL+ AE
Sbjct: 639 VGEEGGAAVAKLEPHLQPRGQPAPQPLHTLVLAAE 673
>AY003835-1|AAK11802.1| 100|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 100
Score = 30.7 bits (66), Expect = 5.2
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = -2
Query: 652 GSGSSALTDTWVRGRLFTVNSASAS 578
G GSSA D W +G L TV+S SAS
Sbjct: 70 GRGSSAPMDYWGQGTLVTVSSGSAS 94
>AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator
subunit SRm300 protein.
Length = 2296
Score = 30.7 bits (66), Expect = 5.2
Identities = 34/120 (28%), Positives = 45/120 (37%), Gaps = 4/120 (3%)
Frame = +2
Query: 344 RRYGATTAPIYGVPTRSCAKLWTRR-LSMKRA*NLSNGASSHRARLSWAAPGREWCGGKG 520
RR G + +P RS ++ T+R S R+ S+ R S +P R
Sbjct: 479 RRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRS-RSPQRRGRSRSP 537
Query: 521 RALGHGTAEAPDARNISYSASRGRVHSEQPTSHPRIGER---RRSRPSDTEPLPAREARR 691
+ G + R S SA RGR HS P + R R RR R P R R
Sbjct: 538 QRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSR 597
>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein
protein.
Length = 2752
Score = 30.7 bits (66), Expect = 5.2
Identities = 34/120 (28%), Positives = 45/120 (37%), Gaps = 4/120 (3%)
Frame = +2
Query: 344 RRYGATTAPIYGVPTRSCAKLWTRR-LSMKRA*NLSNGASSHRARLSWAAPGREWCGGKG 520
RR G + +P RS ++ T+R S R+ S+ R S +P R
Sbjct: 479 RRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRS-RSPQRRGRSRSP 537
Query: 521 RALGHGTAEAPDARNISYSASRGRVHSEQPTSHPRIGER---RRSRPSDTEPLPAREARR 691
+ G + R S SA RGR HS P + R R RR R P R R
Sbjct: 538 QRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSR 597
>AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein
protein.
Length = 956
Score = 30.7 bits (66), Expect = 5.2
Identities = 34/120 (28%), Positives = 45/120 (37%), Gaps = 4/120 (3%)
Frame = +2
Query: 344 RRYGATTAPIYGVPTRSCAKLWTRR-LSMKRA*NLSNGASSHRARLSWAAPGREWCGGKG 520
RR G + +P RS ++ T+R S R+ S+ R S +P R
Sbjct: 444 RRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRS-RSPQRRGRSRSP 502
Query: 521 RALGHGTAEAPDARNISYSASRGRVHSEQPTSHPRIGER---RRSRPSDTEPLPAREARR 691
+ G + R S SA RGR HS P + R R RR R P R R
Sbjct: 503 QRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSR 562
>AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein
protein.
Length = 1262
Score = 30.7 bits (66), Expect = 5.2
Identities = 34/120 (28%), Positives = 45/120 (37%), Gaps = 4/120 (3%)
Frame = +2
Query: 344 RRYGATTAPIYGVPTRSCAKLWTRR-LSMKRA*NLSNGASSHRARLSWAAPGREWCGGKG 520
RR G + +P RS ++ T+R S R+ S+ R S +P R
Sbjct: 269 RRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRS-RSPQRRGRSRSP 327
Query: 521 RALGHGTAEAPDARNISYSASRGRVHSEQPTSHPRIGER---RRSRPSDTEPLPAREARR 691
+ G + R S SA RGR HS P + R R RR R P R R
Sbjct: 328 QRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSR 387
>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
Length = 2800
Score = 30.7 bits (66), Expect = 5.2
Identities = 34/120 (28%), Positives = 45/120 (37%), Gaps = 4/120 (3%)
Frame = +2
Query: 344 RRYGATTAPIYGVPTRSCAKLWTRR-LSMKRA*NLSNGASSHRARLSWAAPGREWCGGKG 520
RR G + +P RS ++ T+R S R+ S+ R S +P R
Sbjct: 527 RRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRS-RSPQRRGRSRSP 585
Query: 521 RALGHGTAEAPDARNISYSASRGRVHSEQPTSHPRIGER---RRSRPSDTEPLPAREARR 691
+ G + R S SA RGR HS P + R R RR R P R R
Sbjct: 586 QRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSR 645
>Y18448-1|CAA77176.1| 3851|Homo sapiens Bassoon protein protein.
Length = 3851
Score = 30.3 bits (65), Expect = 6.9
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +1
Query: 25 LTP-TPSDTERNPQLSSVSYPQGHSTASSHRRSPTE 129
+TP +P+ +ER+P SS ++ GHS +++ S TE
Sbjct: 1323 MTPASPAGSERSPSPSSTAHSYGHSPTTANYGSQTE 1358
>AL133561-1|CAB63715.1| 580|Homo sapiens hypothetical protein
protein.
Length = 580
Score = 30.3 bits (65), Expect = 6.9
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = +1
Query: 31 PTPSDTERNPQLSSVSYPQGHSTASSHRRSPTEQTGTISAT 153
P S T R P+ S P S +SHR SPT S T
Sbjct: 216 PRASPTRRPPRASPTRTPPRESLRTSHRASPTRMPPRASPT 256
>AF052224-1|AAC83555.1| 3926|Homo sapiens neuronal double zinc finger
protein protein.
Length = 3926
Score = 30.3 bits (65), Expect = 6.9
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +1
Query: 25 LTP-TPSDTERNPQLSSVSYPQGHSTASSHRRSPTE 129
+TP +P+ +ER+P SS ++ GHS +++ S TE
Sbjct: 1398 MTPASPAGSERSPSPSSTAHSYGHSPTTANYGSQTE 1433
>D80010-1|BAA11505.1| 899|Homo sapiens KIAA0188 protein.
Length = 899
Score = 29.9 bits (64), Expect = 9.1
Identities = 34/141 (24%), Positives = 58/141 (41%), Gaps = 4/141 (2%)
Frame = +1
Query: 28 TPTPSDTERNPQLSSVSYPQGHSTASSHRRSPTEQTGTISATIYIRGPRLLRALSSDHRQ 207
+PTPS + P S P+ S S T Q ++ P+ ++ SS H+
Sbjct: 246 SPTPSPSGSRP-----STPKSDSELVSKSTERTGQKNPEMLWLWGELPQAAKS-SSPHKM 299
Query: 208 KH--PEALRGHLHMSHYAAVHLEPAASLSTDSAVMALRRMIARRGAPTEIWSDNGTNLR- 378
K P + R SH+ A+H E + + S S + ++ + TE+ N +L
Sbjct: 300 KESSPLSSRKICDKSHFQAIHSESSDTFSDQSPTLVGGALLDQNKPQTEMQFVNEEDLET 359
Query: 379 -GADKELRQALDKATEHEASL 438
GA L +++ AS+
Sbjct: 360 LGAAAPLLPMIEELKPPSASV 380
>BC047235-1|AAH47235.1| 540|Homo sapiens upstream binding protein 1
(LBP-1a) protein.
Length = 540
Score = 29.9 bits (64), Expect = 9.1
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 28 TPTPSDTERNPQLSSVSYPQGHSTASSHRRSPTEQT 135
+P+P+ T +PQ S+ S P +S++ +H+ QT
Sbjct: 324 SPSPAPTFTSPQQSTCSVPDSNSSSPNHQGDGASQT 359
>BC030537-1|AAH30537.1| 890|Homo sapiens lipin 1 protein.
Length = 890
Score = 29.9 bits (64), Expect = 9.1
Identities = 34/141 (24%), Positives = 58/141 (41%), Gaps = 4/141 (2%)
Frame = +1
Query: 28 TPTPSDTERNPQLSSVSYPQGHSTASSHRRSPTEQTGTISATIYIRGPRLLRALSSDHRQ 207
+PTPS + P S P+ S S T Q ++ P+ ++ SS H+
Sbjct: 237 SPTPSPSGSRP-----STPKSDSELVSKSTERTGQKNPEMLWLWGELPQAAKS-SSPHKM 290
Query: 208 KH--PEALRGHLHMSHYAAVHLEPAASLSTDSAVMALRRMIARRGAPTEIWSDNGTNLR- 378
K P + R SH+ A+H E + + S S + ++ + TE+ N +L
Sbjct: 291 KESSPLSSRKICDKSHFQAIHSESSDTFSDQSPTLVGGALLDQNKPQTEMQFVNEEDLET 350
Query: 379 -GADKELRQALDKATEHEASL 438
GA L +++ AS+
Sbjct: 351 LGAAAPLLPMIEELKPPSASV 371
>AY393158-1|AAS86092.1| 166|Homo sapiens immunoglobulin heavy chain
protein.
Length = 166
Score = 29.9 bits (64), Expect = 9.1
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -2
Query: 667 WFGVRGSGSSALTDTWVRGRLFTVNSASAS 578
++ + S SS L D W +G L TV+S SAS
Sbjct: 107 YYCAKDSDSSGLPDYWGQGTLVTVSSGSAS 136
>AL358216-1|CAH69849.1| 221|Homo sapiens novel protein protein.
Length = 221
Score = 29.9 bits (64), Expect = 9.1
Identities = 22/65 (33%), Positives = 28/65 (43%)
Frame = +3
Query: 102 VQPQAITHRADWHNIGDHLHTWASITSGPIK*PPAEAPRSTTWPSSHVSLRCGTFRTGSE 281
V PQ R WHN +WAS G ++ P PR + S S + GT + S
Sbjct: 87 VLPQPPLVRGPWHNTNSPWDSWAS--RGKLRVCPCRTPRLHS--SGCFSSKAGTALSPSL 142
Query: 282 PQHGL 296
P GL
Sbjct: 143 PVPGL 147
>AK096000-1|BAC04668.1| 221|Homo sapiens protein ( Homo sapiens
cDNA FLJ38681 fis, clone KIDNE2000678. ).
Length = 221
Score = 29.9 bits (64), Expect = 9.1
Identities = 22/65 (33%), Positives = 28/65 (43%)
Frame = +3
Query: 102 VQPQAITHRADWHNIGDHLHTWASITSGPIK*PPAEAPRSTTWPSSHVSLRCGTFRTGSE 281
V PQ R WHN +WAS G ++ P PR + S S + GT + S
Sbjct: 87 VLPQPPLVRGPWHNTNSPWDSWAS--RGKLRVCPCRTPRLHS--SGCFSSKAGTALSPSL 142
Query: 282 PQHGL 296
P GL
Sbjct: 143 PVPGL 147
>AK023274-1|BAB14501.1| 503|Homo sapiens protein ( Homo sapiens
cDNA FLJ13212 fis, clone NT2RP4001029, highly similar to
Homo sapiens transcription factor LBP-1b (LBP-1) mRNA.
).
Length = 503
Score = 29.9 bits (64), Expect = 9.1
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 28 TPTPSDTERNPQLSSVSYPQGHSTASSHRRSPTEQT 135
+P+P+ T +PQ S+ S P +S++ +H+ QT
Sbjct: 287 SPSPAPTFTSPQQSTCSVPDSNSSSPNHQGDGASQT 322
>AF198487-1|AAF32274.1| 540|Homo sapiens transcription factor
LBP-1b protein.
Length = 540
Score = 29.9 bits (64), Expect = 9.1
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 28 TPTPSDTERNPQLSSVSYPQGHSTASSHRRSPTEQT 135
+P+P+ T +PQ S+ S P +S++ +H+ QT
Sbjct: 324 SPSPAPTFTSPQQSTCSVPDSNSSSPNHQGDGASQT 359
>AC012456-1|AAY14695.1| 890|Homo sapiens unknown protein.
Length = 890
Score = 29.9 bits (64), Expect = 9.1
Identities = 34/141 (24%), Positives = 58/141 (41%), Gaps = 4/141 (2%)
Frame = +1
Query: 28 TPTPSDTERNPQLSSVSYPQGHSTASSHRRSPTEQTGTISATIYIRGPRLLRALSSDHRQ 207
+PTPS + P S P+ S S T Q ++ P+ ++ SS H+
Sbjct: 237 SPTPSPSGSRP-----STPKSDSELVSKSTERTGQKNPEMLWLWGELPQAAKS-SSPHKM 290
Query: 208 KH--PEALRGHLHMSHYAAVHLEPAASLSTDSAVMALRRMIARRGAPTEIWSDNGTNLR- 378
K P + R SH+ A+H E + + S S + ++ + TE+ N +L
Sbjct: 291 KESSPLSSRKICDKSHFQAIHSESSDTFSDQSPTLVGGALLDQNKPQTEMQFVNEEDLET 350
Query: 379 -GADKELRQALDKATEHEASL 438
GA L +++ AS+
Sbjct: 351 LGAAAPLLPMIEELKPPSASV 371
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,373,185
Number of Sequences: 237096
Number of extensions: 3172405
Number of successful extensions: 13327
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 11663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13322
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8007229802
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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