Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021187
         (695 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.2  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   2.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.1  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   2.8  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   3.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   3.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   3.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   3.7  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   4.8  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   4.8  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   6.4  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   6.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.5  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 89  DTPPRPATGDHPPS 130
           DTPP+PA    PPS
Sbjct: 336 DTPPKPAPPPPPPS 349


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +1

Query: 334 GAPTEIWSDNGTNLRGADKELRQALDKATEHEASLKLIQWRFIPPGAPFMG 486
           GAP EI    GT    A + ++Q          SL ++ W+ +    PF G
Sbjct: 206 GAPNEIDKFYGTPGYTAPEVIKQNRPTPAADIYSLGIVAWQMLFRKLPFAG 256


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 130 QTGTISATIYIRGPRLLRALSSDHRQKH 213
           + G+   T    G RLL  + S H Q+H
Sbjct: 175 EPGSTGTTTTSTGTRLLHGILSQHPQQH 202


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +2

Query: 143 YRRPFTYVGLDYFGPYQVTTGRSTQKHYVA 232
           +R+P  Y   D F P      ++  +HY A
Sbjct: 448 HRQPHIYPNPDVFDPDNFLPEKTANRHYYA 477


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 612 PLTHVSVSADDPDPLTPNHFLL 677
           P T+  +  D  DPL P HF L
Sbjct: 145 PDTYFIMHGDFKDPLIPVHFAL 166


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 612 PLTHVSVSADDPDPLTPNHFLL 677
           P T+  +  D  DPL P HF L
Sbjct: 145 PDTYFIMHGDFKDPLIPVHFAL 166


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 612 PLTHVSVSADDPDPLTPNHFLL 677
           P T+  +  D  DPL P HF L
Sbjct: 196 PDTYFIMHGDFKDPLIPVHFAL 217


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 612 PLTHVSVSADDPDPLTPNHFLL 677
           P T+  +  D  DPL P HF L
Sbjct: 145 PDTYFIMHGDFKDPLIPVHFAL 166


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 519 PLPPHHSLPGAAH 481
           P PP+H L G+ H
Sbjct: 96  PYPPNHPLSGSKH 108


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 519 PLPPHHSLPGAAH 481
           P PP+H L G+ H
Sbjct: 96  PYPPNHPLSGSKH 108


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +3

Query: 270 TGSEPQHGLSSDGTPAHDRAPGS 338
           TGS PQH  SS  T    R   S
Sbjct: 65  TGSSPQHSGSSASTSPAARTTSS 87


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 569 SYSASRGRVHSEQPTSHPRIGERRRSRPSDTE 664
           S ++ R R H  Q TS     ERR SR  + E
Sbjct: 213 SSNSLRNRTHDFQHTSSRYSRERRCSRDRNRE 244


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
 Frame = +2

Query: 491  PGREWCGGKGRALGHGTAEAPDARNISYSASR--GRVHSEQPTSHPRIGERRRSRPSDTE 664
            PG    G  G  +GH T  +  +R+ S S  R  GR +S  P+     G      P   +
Sbjct: 1751 PGNGHSGTMGPPVGHPTNASAHSRSGSQSMPRQNGR-YSRVPSQGGGSGTHNVFSPEYDD 1809

Query: 665  P 667
            P
Sbjct: 1810 P 1810


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,219
Number of Sequences: 438
Number of extensions: 5228
Number of successful extensions: 16
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)