Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021187
(695 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g01290.1 68417.m00170 expressed protein 29 2.9
At3g50060.1 68416.m05473 myb family transcription factor contain... 29 2.9
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 29 3.9
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 29 3.9
At4g28540.1 68417.m04083 casein kinase, putative similar to case... 28 5.1
At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam ... 28 5.1
At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam ... 28 5.1
At5g57200.1 68418.m07145 epsin N-terminal homology (ENTH) domain... 28 6.8
At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21) ... 28 6.8
At5g41900.1 68418.m05101 hydrolase, alpha/beta fold family prote... 28 6.8
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 28 6.8
At1g10470.1 68414.m01179 two-component responsive regulator / re... 28 6.8
At3g03380.1 68416.m00336 DegP protease, putative contains simila... 27 9.0
At2g20840.1 68415.m02456 secretory carrier membrane protein (SCA... 27 9.0
>At4g01290.1 68417.m00170 expressed protein
Length = 991
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 43 DTERNPQLSSVSYPQGHSTASSHRRSPTEQTGTISA 150
DT+ NP LS+ QGH+T + + S T T +++A
Sbjct: 521 DTKANPDLSTDFPFQGHATKRTDQLSSTSTTKSVTA 556
>At3g50060.1 68416.m05473 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain;
identical to cDNA MYB-related protein (1107 bp)
GI:1263096
Length = 301
Score = 29.1 bits (62), Expect = 2.9
Identities = 23/84 (27%), Positives = 33/84 (39%)
Frame = +3
Query: 441 TYPMALHPTGRAFHGRRLGENGAAVKAALSATEQPRRPTPEIFHTLLAEAEFTVNSRPLT 620
++ A P + NG V + S P P ++F + FTV +PL
Sbjct: 133 SFDSAFAPVDTGLYMSPESPNGIDVSDS-STIPSPSSPVAQLFKPMPISGGFTVVPQPLP 191
Query: 621 HVSVSADDPDPLTPNHFLLGRPGA 692
V +S+ DP P L PGA
Sbjct: 192 -VEMSSSSEDP--PTSLSLSLPGA 212
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +2
Query: 515 KGRALGHGTAEAPDARNISYSASRGRVHSEQPTSHPRIGERRRSRPSDTEPLPA 676
+ R+ + +P A++ S ++ S P S R RRSR PLP+
Sbjct: 224 RSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSRSPSPRRSRSRSRSPLPS 277
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +2
Query: 515 KGRALGHGTAEAPDARNISYSASRGRVHSEQPTSHPRIGERRRSRPSDTEPLPA 676
+ R+ + +P A++ S ++ S P S R RRSR PLP+
Sbjct: 224 RSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSRSPSPRRSRSRSRSPLPS 277
>At4g28540.1 68417.m04083 casein kinase, putative similar to casein
kinase I [Arabidopsis thaliana] gi|1103318|emb|CAA55395;
contains protein kinase domain, Pfam:PF00069
Length = 479
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 685 GLPSRKWFGVRGSGSSALTD 626
G+PS KWFGV+G ++ + D
Sbjct: 68 GIPSLKWFGVQGDYNAMVID 87
>At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam
profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
domain;
Length = 299
Score = 28.3 bits (60), Expect = 5.1
Identities = 23/68 (33%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Frame = +3
Query: 162 TWASITSGPIK*PPAEAPRSTTWPSSHVSLRCGTFRTG-SEPQHGLSSDGTPAHDRAPGS 338
T AS+ S P+ P P P+ T T EP S TPA D AP
Sbjct: 110 TPASV-SAPVAPAPTRPPPPAPTPTPAPVAATETVTTPIPEPVPATISSSTPAPDSAPVG 168
Query: 339 SDGDMERQ 362
S GD+ Q
Sbjct: 169 SQGDVYGQ 176
>At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam
profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
domain;
Length = 419
Score = 28.3 bits (60), Expect = 5.1
Identities = 23/68 (33%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Frame = +3
Query: 162 TWASITSGPIK*PPAEAPRSTTWPSSHVSLRCGTFRTG-SEPQHGLSSDGTPAHDRAPGS 338
T AS+ S P+ P P P+ T T EP S TPA D AP
Sbjct: 110 TPASV-SAPVAPAPTRPPPPAPTPTPAPVAATETVTTPIPEPVPATISSSTPAPDSAPVG 168
Query: 339 SDGDMERQ 362
S GD+ Q
Sbjct: 169 SQGDVYGQ 176
>At5g57200.1 68418.m07145 epsin N-terminal homology (ENTH)
domain-containing protein / clathrin assembly
protein-related low similarity to clathrin assembly
protein AP180 [Xenopus laevis] GI:6492344; contains Pfam
profile PF01417: ENTH domain
Length = 591
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Frame = +1
Query: 7 TSSLLGL---TPTPSDTERNPQLSSVSYPQGHST-ASSHRRSPTEQTGT 141
T LLGL P ++ E+N S YP GH T A S+ S E G+
Sbjct: 380 TDDLLGLHEINPKAAEIEQNNAFSLAIYPPGHETSAPSNSLSLIEAGGS 428
>At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21)
identical to ubiquitin-specific protease 21 GI:11993482
[Arabidopsis thaliana]
Length = 732
Score = 27.9 bits (59), Expect = 6.8
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Frame = +3
Query: 435 LKTYPMALHPTGRAFHGRRLGENGAAVKAALSATEQPRRPTPEIFHTLLA---EAEFTVN 605
LK + P +A G R G +K + Q R+ T +I L + E
Sbjct: 615 LKVQNQDISPKRKA--GERATLGGPKLKYQKPNSHQKRQGTFQIQRAHLQTKKQEESRKT 672
Query: 606 SRPLTHVSVSADDPDPLTPNHFL 674
RPL +V+A PDP NH L
Sbjct: 673 KRPLFRSNVAASAPDPKYKNHAL 695
>At5g41900.1 68418.m05101 hydrolase, alpha/beta fold family protein
low similarity to
2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolase
[Pseudomonas putida] GI:2822275; contains Pfam profile
PF00561: hydrolase, alpha/beta fold family
Length = 471
Score = 27.9 bits (59), Expect = 6.8
Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 3/112 (2%)
Frame = +1
Query: 34 TPSDTERNPQLSSVSYPQGHSTASSHRRSPTEQTGTISATIYIRGPRLLRALSSDHRQKH 213
+P + + + VS G+S S RS IS T+Y RGP LL LS R
Sbjct: 48 SPPEAKAKTEKIIVSERGGYSKVVSLTRSKIH-FDEISDTLYSRGPSLLTRLSKLVRSVK 106
Query: 214 PEALRGHLHMSHY--AAVHLEPAASLST-DSAVMALRRMIARRGAPTEIWSD 360
+G + + + H E +S +M L + + + WSD
Sbjct: 107 CFNYKGLIMRGNVVESCDHHESKKKISKGKKRLMTLNSTVIEKSSTAPRWSD 158
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Frame = +2
Query: 38 PVTRSVIHNCLPCRIRKDTPPRPATGDHPPSRLAQYRRPF-TYVGLDYFGP 187
P V+H+ P + +PP P PP +Y P +G+ Y P
Sbjct: 704 PPPAPVVHHSPPPPMVHHSPPPPVIHQSPPPPSPEYEGPLPPVIGVSYASP 754
>At1g10470.1 68414.m01179 two-component responsive regulator /
response regulator 4 (ARR4) identical to responce
regulator1 GI:3273195 from [Arabidopsis thaliana];
identical to cDNA ARR4 mRNA for response regulator 4
GI:3953596
Length = 259
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +3
Query: 486 RRLGENGAAVKAALSATEQPRRPTPEIFHTLLAEAEFTVNSRPLTHVSVSADDP 647
R+L E+ ++V ++L P +PE L E + +S PL+ V + + P
Sbjct: 173 RKLPEDSSSVNSSLPPPSPPLTISPESSPPLTVSTESSDSSPPLSPVEIFSTSP 226
>At3g03380.1 68416.m00336 DegP protease, putative contains
similarity to degP GI:2623992 from [Bradyrhizobium
japonicum]
Length = 1097
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 579 LAEAEFTVNSRPLTHVSVSADDPDPLTPNHFL 674
+ E E +PL+ VSVS D +TP+HFL
Sbjct: 350 ILELEIERGGQPLS-VSVSVQDLHSITPDHFL 380
>At2g20840.1 68415.m02456 secretory carrier membrane protein (SCAMP)
family protein contains Pfam domain, PF04144: SCAMP
family
Length = 282
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 331 RGAPTEIWSDNGTNLRGADKELRQALDKATEHEASLK 441
RGA +I D+G +L+ +KELR+ + E +K
Sbjct: 40 RGATMDIPLDSGKDLKAKEKELREKEAELKRREQEIK 76
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,456,900
Number of Sequences: 28952
Number of extensions: 402910
Number of successful extensions: 1401
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1400
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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