Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021185
(765 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch... 97 2e-21
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 37 0.004
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 27 2.2
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase... 27 2.9
SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces pombe... 26 5.1
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 26 6.8
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar... 25 9.0
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 25 9.0
>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 341
Score = 97.5 bits (232), Expect = 2e-21
Identities = 49/87 (56%), Positives = 63/87 (72%), Gaps = 1/87 (1%)
Frame = +1
Query: 259 VTRLALYDIAPVTPGVAADLSHMNTPAKVSGHKGPEE-LSAAIKDADVVVIPAGVPRKPG 435
V+ LAL+DI PGVAAD+ H+NT + V G+ ++ L A+ ADVV+IPAGVPRKPG
Sbjct: 54 VSELALFDIRGA-PGVAADIGHINTTSNVVGYAPDDKGLEKALNGADVVIIPAGVPRKPG 112
Query: 436 MNRDDLFNTNASIVRDIALSIAQNDPK 516
M RDDLF TNASIVRD+A + + P+
Sbjct: 113 MTRDDLFATNASIVRDLAFAAGETCPE 139
Score = 53.6 bits (123), Expect = 3e-08
Identities = 23/43 (53%), Positives = 31/43 (72%)
Frame = +3
Query: 510 PKAIVAIITNPVNSTVPIASEVLKKAGVYDPNRVLGVTTLDVV 638
P+A ++TNPVNSTVPI + L++ GV+ P + GVTTLD V
Sbjct: 138 PEAKYLVVTNPVNSTVPIFKKALERVGVHQPKHLFGVTTLDSV 180
Score = 37.1 bits (82), Expect = 0.003
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 650 FVGEINGVDPTSVAVPVIGGHSGITIIPILSQ 745
F ++ + +PV+GGHSG TI+P+LSQ
Sbjct: 185 FTSQVTNGKAELLHIPVVGGHSGATIVPLLSQ 216
Score = 35.5 bits (78), Expect = 0.008
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = +2
Query: 155 KNFSTTSQRNFKXXXXXXXXXIGQPLALLLKQN 253
++FSTTS R FK IGQPL++LLK N
Sbjct: 19 RSFSTTSSRAFKVAVLGAGGGIGQPLSMLLKLN 51
>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 36.7 bits (81), Expect = 0.004
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = +1
Query: 385 KDADVVVIPAGVPRKPGMNRDDLFNTNASIVRDIALSIAQ 504
KDA VVI AG +KPG R DL N SI ++I + +
Sbjct: 86 KDATAVVITAGKNQKPGETRMDLLKANISIFKEILREVTK 125
Score = 25.4 bits (53), Expect = 9.0
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 653 VGEINGVDPTSVAVPVIGGH 712
+G++ G+DP SV +IG H
Sbjct: 173 IGKLYGLDPQSVNADIIGEH 192
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 27.5 bits (58), Expect = 2.2
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 235 PSTEAESLVTRLALYDIAPVTP 300
P TE ++L TRL ++++ P+ P
Sbjct: 70 PETETQNLKTRLGIFELEPLPP 91
>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
desaturase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 362
Score = 27.1 bits (57), Expect = 2.9
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 133 PCCTKWCKELFHHITEEL*SGGRWCR 210
P C WC ++ IT+ + G WCR
Sbjct: 319 PDCKSWCGIIYQFITDS--NVGMWCR 342
>SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 455
Score = 26.2 bits (55), Expect = 5.1
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 274 LYDIAPVTPGVAADLSHMNTPAKVSGHKGPEELSAA 381
L + APV G A S + V+G GP ELS A
Sbjct: 12 LINSAPVILGYALQNSLQTSSVIVTGRLGPSELSVA 47
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 121 KTCRPCCTKWCKELFHHITEEL*SGGRWCRRWY 219
K C+ C + C+ +HHI E+L CRR Y
Sbjct: 33 KPCQ-CGYRVCRFCWHHIKEDLNGRCPACRRLY 64
>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 289
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 86 RVYTCIFELFPPDPPD 39
RV T + LFPPDP D
Sbjct: 199 RVKTALSALFPPDPKD 214
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 256 LVTRLALYDIAPVTPGVAADLSHMNTPAKVSGHKGPEELSAAI 384
++ RLALY+ A V P + + + + + SG+ +E SA +
Sbjct: 586 IIGRLALYNPAHVMPSLRKTIIQLLSDMEYSGNSRQKEESAQL 628
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,952,140
Number of Sequences: 5004
Number of extensions: 60794
Number of successful extensions: 153
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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