Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021185
(765 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0072 + 26184592-26184828,26184934-26185107,26185591-261857... 110 1e-24
08_02_0774 - 21047696-21048889 109 2e-24
05_07_0204 - 28397597-28397737,28398225-28398342,28399215-283993... 109 3e-24
01_06_1220 + 35493575-35494765 109 3e-24
07_03_1371 - 26100553-26101767 107 1e-23
03_06_0127 - 31872840-31872912,31873021-31873115,31873199-318732... 100 1e-21
12_02_1221 - 27130321-27130491,27130616-27130664,27131120-271311... 97 1e-20
12_02_1245 - 27308143-27308787,27308923-27308983,27309064-273094... 29 3.1
05_04_0057 + 17543016-17543312 29 3.1
10_06_0120 - 10979458-10979665,10979909-10980585,10981315-109815... 29 4.1
05_03_0485 + 14608663-14608989,14609265-14609535,14609720-146098... 29 4.1
06_03_0019 + 15506702-15506896,15507741-15507875,15508264-155085... 28 7.1
04_04_1272 - 32288142-32288456,32288538-32288670,32288780-322890... 28 7.1
08_02_1221 - 25371247-25371387,25371472-25372385,25372675-25373350 28 9.4
06_01_1114 - 9179614-9180167,9180223-9180544,9181524-9181820,918... 28 9.4
04_04_0928 + 29472658-29472772,29473198-29473304,29473441-29473497 28 9.4
01_07_0385 - 43212580-43213142,43213234-43213612 28 9.4
>01_06_0072 +
26184592-26184828,26184934-26185107,26185591-26185759,
26185863-26185924,26186506-26186630,26186735-26186852,
26187760-26187897
Length = 340
Score = 110 bits (265), Expect = 1e-24
Identities = 52/89 (58%), Positives = 69/89 (77%)
Frame = +1
Query: 256 LVTRLALYDIAPVTPGVAADLSHMNTPAKVSGHKGPEELSAAIKDADVVVIPAGVPRKPG 435
LV+ L+LYDIA TPGVAAD+SH+N PA+V G G ++L A++ +D+V+IPAGVPRKPG
Sbjct: 52 LVSSLSLYDIAG-TPGVAADVSHINAPAQVKGFMGDDQLGEALEGSDIVIIPAGVPRKPG 110
Query: 436 MNRDDLFNTNASIVRDIALSIAQNDPKLL 522
M RDDLFN NA IV+++ +IA+ P L
Sbjct: 111 MTRDDLFNINAGIVKNLCTAIAKYCPNAL 139
Score = 66.5 bits (155), Expect = 2e-11
Identities = 30/43 (69%), Positives = 36/43 (83%)
Frame = +3
Query: 510 PKAIVAIITNPVNSTVPIASEVLKKAGVYDPNRVLGVTTLDVV 638
P A+V +I+NPVNSTVPIA+EV KKAG YD ++ GVTTLDVV
Sbjct: 136 PNALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVV 178
Score = 44.4 bits (100), Expect = 1e-04
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = +2
Query: 650 FVGEINGVDPTSVAVPVIGGHSGITIIPILSQCQPA 757
+ G+ N V T V VPV+GGH+GITI+P+ SQ PA
Sbjct: 184 YAGKAN-VPVTDVNVPVVGGHAGITILPLFSQATPA 218
>08_02_0774 - 21047696-21048889
Length = 397
Score = 109 bits (263), Expect = 2e-24
Identities = 55/87 (63%), Positives = 65/87 (74%)
Frame = +1
Query: 256 LVTRLALYDIAPVTPGVAADLSHMNTPAKVSGHKGPEELSAAIKDADVVVIPAGVPRKPG 435
LV+ L LYDIA V GVAADLSH NTP++V GP EL+ +K DVVVIPAGVPRKPG
Sbjct: 100 LVSELHLYDIANVK-GVAADLSHCNTPSQVLDFTGPSELANCLKGVDVVVIPAGVPRKPG 158
Query: 436 MNRDDLFNTNASIVRDIALSIAQNDPK 516
M RDDLFN NASIV+ + ++A N P+
Sbjct: 159 MTRDDLFNINASIVKSLVEAVADNCPE 185
Score = 67.7 bits (158), Expect = 9e-12
Identities = 30/43 (69%), Positives = 38/43 (88%)
Frame = +3
Query: 510 PKAIVAIITNPVNSTVPIASEVLKKAGVYDPNRVLGVTTLDVV 638
P+A + II+NPVNSTVPIA+EVLK+ GVY+P ++ GVTTLDVV
Sbjct: 184 PEAFIHIISNPVNSTVPIAAEVLKQKGVYNPKKLFGVTTLDVV 226
Score = 43.6 bits (98), Expect = 2e-04
Identities = 18/38 (47%), Positives = 27/38 (71%)
Frame = +2
Query: 647 TFVGEINGVDPTSVAVPVIGGHSGITIIPILSQCQPAL 760
TFV + + V VPV+GGH+GITI+P+LS+ P++
Sbjct: 230 TFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSV 267
>05_07_0204 -
28397597-28397737,28398225-28398342,28399215-28399339,
28399683-28399744,28399867-28400035,28400594-28400767,
28400856-28401089
Length = 340
Score = 109 bits (261), Expect = 3e-24
Identities = 53/89 (59%), Positives = 68/89 (76%)
Frame = +1
Query: 256 LVTRLALYDIAPVTPGVAADLSHMNTPAKVSGHKGPEELSAAIKDADVVVIPAGVPRKPG 435
LV+ L+LYDIA TPGVAAD+SH+N+PA V G G E+L A++ +DVV+IPAGVPRKPG
Sbjct: 51 LVSSLSLYDIAG-TPGVAADVSHINSPALVKGFVGEEQLGEALEGSDVVIIPAGVPRKPG 109
Query: 436 MNRDDLFNTNASIVRDIALSIAQNDPKLL 522
M RDDLFN NA IV+ + +I++ P L
Sbjct: 110 MTRDDLFNINAGIVKGLCTAISKYCPNAL 138
Score = 66.5 bits (155), Expect = 2e-11
Identities = 30/43 (69%), Positives = 36/43 (83%)
Frame = +3
Query: 510 PKAIVAIITNPVNSTVPIASEVLKKAGVYDPNRVLGVTTLDVV 638
P A+V +I+NPVNSTVPIA+EV KKAG YD ++ GVTTLDVV
Sbjct: 135 PNALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVV 177
Score = 44.4 bits (100), Expect = 1e-04
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = +2
Query: 650 FVGEINGVDPTSVAVPVIGGHSGITIIPILSQCQPA 757
+ G+ N V T V VPV+GGH+GITI+P+ SQ PA
Sbjct: 183 YAGKAN-VPVTEVNVPVVGGHAGITILPLFSQATPA 217
>01_06_1220 + 35493575-35494765
Length = 396
Score = 109 bits (261), Expect = 3e-24
Identities = 55/87 (63%), Positives = 65/87 (74%)
Frame = +1
Query: 256 LVTRLALYDIAPVTPGVAADLSHMNTPAKVSGHKGPEELSAAIKDADVVVIPAGVPRKPG 435
LV+ L LYDIA V GVAADLSH NTP++V GP EL+ +K DVVVIPAGVPRKPG
Sbjct: 100 LVSALHLYDIANVK-GVAADLSHCNTPSQVLDFTGPSELANCLKGVDVVVIPAGVPRKPG 158
Query: 436 MNRDDLFNTNASIVRDIALSIAQNDPK 516
M RDDLFN NASIV+ + ++A N P+
Sbjct: 159 MTRDDLFNINASIVKTLVEAVADNCPE 185
Score = 67.7 bits (158), Expect = 9e-12
Identities = 30/43 (69%), Positives = 38/43 (88%)
Frame = +3
Query: 510 PKAIVAIITNPVNSTVPIASEVLKKAGVYDPNRVLGVTTLDVV 638
P+A + II+NPVNSTVPIA+EVLK+ GVY+P ++ GVTTLDVV
Sbjct: 184 PEAFIHIISNPVNSTVPIAAEVLKQKGVYNPKKLFGVTTLDVV 226
Score = 43.6 bits (98), Expect = 2e-04
Identities = 17/38 (44%), Positives = 28/38 (73%)
Frame = +2
Query: 647 TFVGEINGVDPTSVAVPVIGGHSGITIIPILSQCQPAL 760
TF+ + + V VPV+GGH+GITI+P+LS+ +P++
Sbjct: 230 TFIAQKKNLKLIDVDVPVVGGHAGITILPLLSKTRPSV 267
>07_03_1371 - 26100553-26101767
Length = 404
Score = 107 bits (256), Expect = 1e-23
Identities = 54/89 (60%), Positives = 63/89 (70%)
Frame = +1
Query: 256 LVTRLALYDIAPVTPGVAADLSHMNTPAKVSGHKGPEELSAAIKDADVVVIPAGVPRKPG 435
LV+ L LYDIA V GV ADL H NTPAKV+G G EEL+ + DVVVIPAGVPRKPG
Sbjct: 102 LVSALHLYDIANVD-GVTADLGHCNTPAKVAGFTGKEELAGCLAGVDVVVIPAGVPRKPG 160
Query: 436 MNRDDLFNTNASIVRDIALSIAQNDPKLL 522
M RDDLF NA IVR++ ++A + P L
Sbjct: 161 MTRDDLFGINAGIVRELVEAVADHAPAAL 189
Score = 70.1 bits (164), Expect = 2e-12
Identities = 31/43 (72%), Positives = 38/43 (88%)
Frame = +3
Query: 510 PKAIVAIITNPVNSTVPIASEVLKKAGVYDPNRVLGVTTLDVV 638
P A+V +I+NPVNSTVPIA+EVLK+ GVYDP ++ GVTTLDVV
Sbjct: 186 PAALVHVISNPVNSTVPIAAEVLKRKGVYDPRKLFGVTTLDVV 228
Score = 44.8 bits (101), Expect = 8e-05
Identities = 18/36 (50%), Positives = 26/36 (72%)
Frame = +2
Query: 647 TFVGEINGVDPTSVAVPVIGGHSGITIIPILSQCQP 754
TFV E+ G+ V VPV+GGH+ TI+P+LS+ +P
Sbjct: 232 TFVAEMKGLPLADVDVPVVGGHAAATILPLLSKARP 267
>03_06_0127 -
31872840-31872912,31873021-31873115,31873199-31873288,
31873364-31873399,31874039-31874122,31874223-31874312,
31874426-31874740,31875674-31875883,31875965-31876036
Length = 354
Score = 100 bits (239), Expect = 1e-21
Identities = 49/89 (55%), Positives = 62/89 (69%)
Frame = +1
Query: 256 LVTRLALYDIAPVTPGVAADLSHMNTPAKVSGHKGPEELSAAIKDADVVVIPAGVPRKPG 435
LV+ L LYD+ TPGV AD+SHM+T A V G GP +L AA+ D+V+IPAG+PRKPG
Sbjct: 67 LVSVLHLYDVVN-TPGVTADVSHMDTTAVVRGFLGPNQLEAALTGMDLVIIPAGLPRKPG 125
Query: 436 MNRDDLFNTNASIVRDIALSIAQNDPKLL 522
M RDDLFN NA IVR + +A+ P +
Sbjct: 126 MTRDDLFNKNAGIVRSLCEGVAKCCPNAI 154
Score = 72.1 bits (169), Expect = 4e-13
Identities = 33/42 (78%), Positives = 37/42 (88%)
Frame = +3
Query: 510 PKAIVAIITNPVNSTVPIASEVLKKAGVYDPNRVLGVTTLDV 635
P AIV +I+NPVNSTVPIA+EV KKAG YDP R+LGVTTLDV
Sbjct: 151 PNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTTLDV 192
Score = 56.4 bits (130), Expect = 2e-08
Identities = 22/36 (61%), Positives = 29/36 (80%)
Frame = +2
Query: 647 TFVGEINGVDPTSVAVPVIGGHSGITIIPILSQCQP 754
TFV E+ G+DP V VPV+GGH+G+TI+P+LSQ P
Sbjct: 197 TFVAEVLGIDPKDVNVPVVGGHAGVTILPLLSQVHP 232
>12_02_1221 -
27130321-27130491,27130616-27130664,27131120-27131188,
27131845-27131939,27132032-27132121,27132885-27132968,
27133122-27133211,27133310-27133624,27134184-27134399,
27134736-27134774,27135337-27135408
Length = 429
Score = 97.5 bits (232), Expect = 1e-20
Identities = 50/89 (56%), Positives = 60/89 (67%)
Frame = +1
Query: 256 LVTRLALYDIAPVTPGVAADLSHMNTPAKVSGHKGPEELSAAIKDADVVVIPAGVPRKPG 435
LV+ L LYD+ TPGV AD+SHMNT A V G G +L A+ D+V+IPAGVPRKPG
Sbjct: 82 LVSVLHLYDVVN-TPGVTADISHMNTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPG 140
Query: 436 MNRDDLFNTNASIVRDIALSIAQNDPKLL 522
M RDDLFN NA IVR + IA+ P +
Sbjct: 141 MTRDDLFNINAGIVRTLCEGIAKCCPNAI 169
Score = 74.1 bits (174), Expect = 1e-13
Identities = 34/43 (79%), Positives = 38/43 (88%)
Frame = +3
Query: 510 PKAIVAIITNPVNSTVPIASEVLKKAGVYDPNRVLGVTTLDVV 638
P AIV +I+NPVNSTVPIA+EV KKAG YDP R+LGVTTLDVV
Sbjct: 166 PNAIVNVISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTTLDVV 208
Score = 56.0 bits (129), Expect = 3e-08
Identities = 23/36 (63%), Positives = 29/36 (80%)
Frame = +2
Query: 647 TFVGEINGVDPTSVAVPVIGGHSGITIIPILSQCQP 754
TFV E+ G+DP V VPVIGGH+G+TI+P+LSQ P
Sbjct: 212 TFVAEVLGLDPRDVNVPVIGGHAGVTILPLLSQVNP 247
>12_02_1245 -
27308143-27308787,27308923-27308983,27309064-27309440,
27309657-27310517
Length = 647
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +1
Query: 358 GPEELSAAIKDADVVVIPAGVPRKPGMNRDDLFNTNASIVRDIALS 495
G L+ ++ + ++P P PG+N DD++N A + +A S
Sbjct: 577 GNVSLTLGLQHSSSNLVPNAQPGFPGVNEDDIYNATAPLGVTVASS 622
>05_04_0057 + 17543016-17543312
Length = 98
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 123 NLPPLLYKMVQRTFPPHHRGTLKWWSLVP 209
++P L+ V R PP RG +WW L P
Sbjct: 39 SVPSLVEVEVDRCGPPGRRGGRRWWLLCP 67
>10_06_0120 -
10979458-10979665,10979909-10980585,10981315-10981538,
10981763-10982136,10982203-10982786
Length = 688
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 339 QGQRPQGT*GAISSHQRC*CCSHPSRS 419
Q +RPQGT A+ SH C CS+ S
Sbjct: 268 QEKRPQGTVKALDSHVTCEVCSNTGHS 294
>05_03_0485 +
14608663-14608989,14609265-14609535,14609720-14609830,
14609870-14610423
Length = 420
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 345 QRPQGT*GAISSHQRC*CCSHPSRS 419
+RPQGT A+ SH C C H S
Sbjct: 137 KRPQGTVQALDSHVTCEVCDHTGHS 161
>06_03_0019 +
15506702-15506896,15507741-15507875,15508264-15508501,
15508652-15508855,15508945-15509111
Length = 312
Score = 28.3 bits (60), Expect = 7.1
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = +1
Query: 250 ESLVTRLALYDIAPVTPGVAADLSHMNTPAK--VSGHK-GPEELSAAIKDADVVVIPAG 417
E +T + + D AP P AA L V G G + L AAIK ADVV+ G
Sbjct: 31 EDHLTSVLVRDPAPADPAKAAVLQGFRDSGATLVKGDLYGHQSLVAAIKSADVVISAVG 89
>04_04_1272 -
32288142-32288456,32288538-32288670,32288780-32289020,
32289124-32289340,32289557-32289681,32290873-32292157
Length = 771
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 287 AMSYKASLVTRDSASVEGPKAGRYHRRHQRPPL*SSSVM 171
AMS +++T S+ V+ PK H RPPL S ++
Sbjct: 723 AMSAVVAMLTSKSSRVDRPKRPGVHGGRSRPPLRESELL 761
>08_02_1221 - 25371247-25371387,25371472-25372385,25372675-25373350
Length = 576
Score = 27.9 bits (59), Expect = 9.4
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 4/111 (3%)
Frame = -2
Query: 494 DKAMSRTMEALVLNRSSRFIPGLRGTPAGMTTTSASLMAADSSS--GPLWPLTLAGV--F 327
D + R + L + S+R P + A TTTS + + SSS G +G F
Sbjct: 108 DDLIQRASQCLP-STSTRAAPRIAAPAAATTTTSTAAAGSSSSSAVGNAERHASSGTNGF 166
Query: 326 MWERSAATPGVTGAMSYKASLVTRDSASVEGPKAGRYHRRHQRPPL*SSSV 174
R A T TG +S S V + A++ A + R P+ ++SV
Sbjct: 167 TASRVAGTSTSTGRVSMDDSYVRKAKAAMWDGGAAATNSHLPRGPVEANSV 217
>06_01_1114 -
9179614-9180167,9180223-9180544,9181524-9181820,
9181991-9182878,9182896-9182941,9182964-9183350,
9183648-9183985
Length = 943
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 345 QRPQGT*GAISSHQRC*CCSHPSRS 419
+RPQGT A+ SH C C + S S
Sbjct: 198 KRPQGTVKALDSHVTCEVCGNTSHS 222
>04_04_0928 + 29472658-29472772,29473198-29473304,29473441-29473497
Length = 92
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = -2
Query: 401 TTSASLMAADSSSGPLWPLTLAGVFMWERSAATPGVTGAMSY 276
T S SL A+ SSS PL P+ + + ER A P +SY
Sbjct: 17 TISVSLAASPSSSHPLRPVASSVNLVMERVAKRPRGFAFLSY 58
>01_07_0385 - 43212580-43213142,43213234-43213612
Length = 313
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Frame = +3
Query: 252 ISGDQAGFIRHSACDPRRRS-----RPFPHEHPSQGQR 350
I+ A F+R DPRR + P P +HP G R
Sbjct: 118 IASSVASFVRDMLDDPRRAAGGEDTEPVPQDHPEAGDR 155
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,544,290
Number of Sequences: 37544
Number of extensions: 505841
Number of successful extensions: 1622
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1619
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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