Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021185
         (765 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4308| Best HMM Match : Ldh_1_C (HMM E-Value=2.6e-31)                77   1e-14
SB_26173| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.33 
SB_44119| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.77 
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)                    29   4.1  
SB_19666| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_29302| Best HMM Match : LRR_1 (HMM E-Value=1.1e-11)                 28   7.2  

>SB_4308| Best HMM Match : Ldh_1_C (HMM E-Value=2.6e-31)
          Length = 368

 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 33/55 (60%), Positives = 46/55 (83%)
 Frame = +1

Query: 340 KVSGHKGPEELSAAIKDADVVVIPAGVPRKPGMNRDDLFNTNASIVRDIALSIAQ 504
           +V+ H+GP++L AA++   VV IPAGVPRKPGM RDDLFNTNASIV++++ + A+
Sbjct: 55  QVTSHQGPDDLKAALEGCSVVAIPAGVPRKPGMTRDDLFNTNASIVKNLSEACAK 109



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 21/36 (58%), Positives = 28/36 (77%)
 Frame = +2

Query: 647 TFVGEINGVDPTSVAVPVIGGHSGITIIPILSQCQP 754
           TFV E  G+D  ++ +PVIGGHSG+TI+P+LSQ  P
Sbjct: 123 TFVAEAKGLDVNNIKIPVIGGHSGVTILPLLSQTTP 158


>SB_26173| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 986

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
 Frame = -2

Query: 425 RGTPAGMTTTSASLMAADSSSGPLWPLTLAGVFMWERSAATPGVTGAMS-YKASLVT 258
           RG P+GM+TT++S  ++D S   L  +T  G  +   S+ TPG  GA++    SLVT
Sbjct: 779 RGLPSGMSTTNSSTQSSDPS--VLGSVTSVGNLV--TSSLTPGFLGALAELVRSLVT 831


>SB_44119| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 637

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = -3

Query: 673 HAIDLADEGGSATTSRVVTPSTRFGSYTPAFLSTSEAIGT 554
           H ++L + GGS +TS  VTPS+  G  +P   S +  IG+
Sbjct: 47  HLLELRN-GGSVSTSASVTPSSSSGPTSPTLSSRNSIIGS 85


>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 4833

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = -3

Query: 676  VHAIDLADEGGSATTSRVVTPSTRFGSYTPAFLSTSEA-IGTVELTGFVMMATIALGHSE 500
            V A+D A  GG    +RVV   T      P F S S A +      G V++  IA+   E
Sbjct: 1857 VRAVDQATSGGLEGVTRVVINVTDVNDQPPEFTSASVAHVSENSRVGDVVLTVIAVDADE 1916


>SB_19666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 500

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +1

Query: 217 YRPAFGPSTEAESLVTRLAL 276
           YRP+FGPST+  S++  +A+
Sbjct: 16  YRPSFGPSTDIPSILLAIAI 35


>SB_29302| Best HMM Match : LRR_1 (HMM E-Value=1.1e-11)
          Length = 606

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = +1

Query: 280 DIAPVT--PGVAADLSHMNTPAKVSGHKGPEELSAAIKDADVVVIPAGVP 423
           D +PVT  PG++++    + P      K P E S A  D     IP   P
Sbjct: 555 DSSPVTTQPGLSSEKPEASEPEPAPEPKSPAENSTASNDTSTTAIPLPPP 604


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,572,899
Number of Sequences: 59808
Number of extensions: 512515
Number of successful extensions: 1433
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1432
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)