Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021185
         (765 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002197-5|AAB53985.1|  341|Caenorhabditis elegans Malate dehydr...   126   1e-29
AF067942-1|AAG45570.1|  488|Caenorhabditis elegans Hypothetical ...    34   0.096
U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical pr...    31   1.2  
U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z70038-3|CAA93883.2|  541|Caenorhabditis elegans Hypothetical pr...    29   4.8  
U21319-6|AAC46676.3|  535|Caenorhabditis elegans Puf (pumilio/fb...    28   6.3  
U43375-1|AAA83618.1|  709|Caenorhabditis elegans Sulfatase domai...    28   8.4  

>AF002197-5|AAB53985.1|  341|Caenorhabditis elegans Malate
           dehydrogenase protein 1 protein.
          Length = 341

 Score =  126 bits (305), Expect = 1e-29
 Identities = 61/91 (67%), Positives = 74/91 (81%)
 Frame = +1

Query: 250 ESLVTRLALYDIAPVTPGVAADLSHMNTPAKVSGHKGPEELSAAIKDADVVVIPAGVPRK 429
           + LV  LALYD+   TPGVAADLSH+++ AKV+ H GP+EL AA+++ADV+VIPAGVPRK
Sbjct: 51  DPLVAHLALYDVVN-TPGVAADLSHIDSNAKVTAHTGPKELYAAVENADVIVIPAGVPRK 109

Query: 430 PGMNRDDLFNTNASIVRDIALSIAQNDPKLL 522
           PGM RDDLFNTNA IVRD+A  IA+  PK L
Sbjct: 110 PGMTRDDLFNTNAGIVRDLAAVIAKASPKAL 140



 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 39/43 (90%), Positives = 41/43 (95%)
 Frame = +3

Query: 510 PKAIVAIITNPVNSTVPIASEVLKKAGVYDPNRVLGVTTLDVV 638
           PKA++AIITNPVNSTVPIASEVLKKAGVYDP RV GVTTLDVV
Sbjct: 137 PKALIAIITNPVNSTVPIASEVLKKAGVYDPKRVFGVTTLDVV 179



 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 21/36 (58%), Positives = 28/36 (77%)
 Frame = +2

Query: 650 FVGEINGVDPTSVAVPVIGGHSGITIIPILSQCQPA 757
           FV E+ G D +   VPV+GGH+GITIIP+LSQ +P+
Sbjct: 184 FVSELKGHDASKTVVPVVGGHAGITIIPLLSQVKPS 219


>AF067942-1|AAG45570.1|  488|Caenorhabditis elegans Hypothetical
           protein ZK6.8 protein.
          Length = 488

 Score = 34.3 bits (75), Expect = 0.096
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 147 FCTARAAGFRARENIFVVC-LTCIYVYI*TIST*PSRP 37
           FC+ R   F  R  +F+ C LTC+Y  +  IST P+ P
Sbjct: 320 FCSKRIKNFGMRPTMFIGCFLTCLYCALVVISTPPTAP 357


>U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical protein
            C23F12.1a protein.
          Length = 2329

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +1

Query: 274  LYDIAPVTPGVAADLSHMNTPAKVS---GHKGPEELSAAIKDADVVVIPAGV 420
            +YD + +  G   + S++N   + +   G  G   L  AIKDAD V+IP+ V
Sbjct: 990  VYDASEIIVGEIPNQSNLNDTVEFTVDAGRAGFGNLEMAIKDADGVIIPSHV 1041


>U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical protein
            C23F12.1b protein.
          Length = 2747

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +1

Query: 274  LYDIAPVTPGVAADLSHMNTPAKVS---GHKGPEELSAAIKDADVVVIPAGV 420
            +YD + +  G   + S++N   + +   G  G   L  AIKDAD V+IP+ V
Sbjct: 990  VYDASEIIVGEIPNQSNLNDTVEFTVDAGRAGFGNLEMAIKDADGVIIPSHV 1041


>Z70038-3|CAA93883.2|  541|Caenorhabditis elegans Hypothetical
           protein ZK1067.4 protein.
          Length = 541

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 185 SSSVMWWKSSLHHFVQQGRQV 123
           S  ++WWKS  +H+ ++ RQV
Sbjct: 120 SPPIVWWKSVCYHYTRKTRQV 140


>U21319-6|AAC46676.3|  535|Caenorhabditis elegans Puf (pumilio/fbf)
           domain-containingprotein 8 protein.
          Length = 535

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 528 IITNPVNSTVPIASEVLKKAGVYDPNRVLGVTTLDVVALPPS 653
           I TNP N  +P   E      ++   +V+G  TL +   PPS
Sbjct: 48  ISTNPKNERLPDTPEFQFATYMHQGGKVIGQNTLHMFGTPPS 89


>U43375-1|AAA83618.1|  709|Caenorhabditis elegans Sulfatase domain
           protein protein 1 protein.
          Length = 709

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +3

Query: 537 NPVNSTVPIASEVLKKAGVYDPNRVLGVTTLDVVALPPSSARSM 668
           N + + V IA  +L  AGV  P R+ G + L++VAL     + M
Sbjct: 348 NEIVTNVDIAPTMLHIAGVPKPARMNGRSLLELVALKKKKKKHM 391


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,890,952
Number of Sequences: 27780
Number of extensions: 374348
Number of successful extensions: 985
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)