Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021185
         (765 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   2.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   4.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   4.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.2  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   9.5  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 331 CSCGKGRLRRRGSQALCRIKPA 266
           C+C  GR+RRR   A  R KP+
Sbjct: 406 CACCPGRVRRRYQPAF-RCKPS 426


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -3

Query: 649 GGSATTSRVVTPSTRFGSYTPAFLSTSEAIGTVELTGF 536
           GG +++    +PS+ F S +P  L +    G  +L  F
Sbjct: 85  GGGSSSPSPSSPSSFFSSVSPTSLGSENYTGISDLFVF 122


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +2

Query: 671 VDPTSVAVPVIGGHSGITII 730
           + PTS+A+P++G +   T+I
Sbjct: 302 IPPTSLAIPLLGKYLLFTMI 321


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = -2

Query: 419 TPAGMTTTSASLMAADSSSGPLWPLTLAGVFMWERSAA--TPGVT 291
           TPA +TTT A+     +S+    P T + V     + A  T G T
Sbjct: 215 TPATVTTTGATTTLPAASATGTGPATPSAVVATSNATAAMTTGTT 259


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 390 C*CCSHPSRSTP*TGNES 443
           C  CS P R TP +  ES
Sbjct: 389 CVACSPPPRQTPPSRKES 406


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,029
Number of Sequences: 438
Number of extensions: 4525
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)