Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021184
         (706 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   0.79 
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    23   1.8  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    23   2.4  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    22   4.2  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 262  RSPGPSAVGRWKRAARHVAY 321
            ++PGP   G + RAA  +AY
Sbjct: 1660 KAPGPGQAGEYTRAAGFLAY 1679



 Score = 23.4 bits (48), Expect = 1.8
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +1

Query: 253  DRG---RSPGPSAVGRWKRAARHVAYAKWRERLLK 348
            DRG   +S GP   G + RA   +AY +  ER+ K
Sbjct: 2577 DRGLNAKSYGPGEAGEFTRAGGFLAYYEICERVKK 2611


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 15  DCTLGWCAVW 44
           DC LGW  VW
Sbjct: 711 DCDLGWVEVW 720


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -3

Query: 134 PSPRAPAEL*AAETR--FSRRVRATTREHRTGP 42
           PSP AP+EL A ++R   +  V ++T +   GP
Sbjct: 72  PSPPAPSELPALKSRKLNNNNVVSSTNQEIRGP 104


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 420 RPCLQHGHQGL 388
           RP +QHGHQ L
Sbjct: 494 RPWVQHGHQEL 504


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,715
Number of Sequences: 336
Number of extensions: 4507
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)