Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021184
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/...    29   0.86 
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    27   2.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.5  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    26   4.6  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    26   6.0  

>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
           reductase/acetylglutamate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 885

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -2

Query: 360 LAKFLQQSLSPLSVCYMTRSTLPPTDSRRAGRPSPIKACALRRY-TAAKISASRSQGR 190
           ++KF+Q           T+ST PPT S     PS  +    R Y T++  S ++   R
Sbjct: 484 ISKFIQSDKPFADAIIQTQSTKPPTASSTTNNPSSSQINQKRSYSTSSLFSKNKKMNR 541


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 9/110 (8%)
 Frame = +2

Query: 365 QPPAVAPSRPWCPCWRHGRIGVTAYSPFTLRRSSRD--------MAVSGGTCGR-SAERA 517
           +PP++      C  W   R  V  YSP T   +  D          +S G  G  +  +A
Sbjct: 241 RPPSLENYFVECISWIENREFVVFYSPLTSLSNESDEPPHESECFVISVGMNGHFNFGKA 300

Query: 518 TSGLPPVRAPGR*RAHALETCPRWEHSRRDLVAVLGRNLSLRAVVARMLE 667
               PP  A  R   H + +   W+   R LV V     +   V+A  +E
Sbjct: 301 GDPTPPFGAVNRRDHHYIASLHAWKPDLRSLVVVANTASADLGVLALSME 350


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = -2

Query: 345  QQSLSPLSVCYMTRSTLPPTDSRRAGRPSPIKACALRRYTAAKISASRSQGRDPARA 175
            QQ  S ++      STLPP+ S  A  PSP    A +  +AA +S++ +    P R+
Sbjct: 1503 QQPPSSVAPATAPSSTLPPSQSSFAHVPSPAPP-APQHPSAAALSSAPADNSMPHRS 1558


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -2

Query: 585 RGHVSSACARHRPGARTGGSPDVALSADLPQVPPETAMSREDLRK 451
           + HV+   A  R  + T G P+    + L + PP  A S E  R+
Sbjct: 384 KAHVNKNAAADRTTSPTQGQPESPSKSILLRPPPSIASSPESKRR 428


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 333 RAIAEGTWPNFSHPPSHPRGPGARAGGMVGSASRRTLLSP 452
           RA+      +F + P+  RGP A  GG++G A+    L P
Sbjct: 41  RAVISQLANDFVYSPA--RGPNATFGGLIGLAAVAIALGP 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,135,957
Number of Sequences: 5004
Number of extensions: 65981
Number of successful extensions: 189
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)