Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021184
(706 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54589| Best HMM Match : Extensin_2 (HMM E-Value=0.0081) 43 3e-04
SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0) 34 0.13
SB_59555| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.91
SB_15012| Best HMM Match : zf-CCHC (HMM E-Value=1.1e-05) 31 0.91
SB_49862| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3) 31 1.2
SB_42623| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_55440| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_52076| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_41992| Best HMM Match : efhand (HMM E-Value=2.4e-10) 29 3.7
SB_50665| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_43654| Best HMM Match : zf-AD (HMM E-Value=0.2) 29 3.7
SB_26268| Best HMM Match : TIMP (HMM E-Value=2e-06) 29 3.7
SB_22842| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_5598| Best HMM Match : C1_1 (HMM E-Value=0.87) 29 3.7
SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_36315| Best HMM Match : Hom_end (HMM E-Value=4.1) 29 4.9
SB_20442| Best HMM Match : Chitin_bind_3 (HMM E-Value=7.4e-05) 29 4.9
SB_49185| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048) 29 4.9
SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_22560| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_21129| Best HMM Match : Pkinase (HMM E-Value=2.5e-07) 28 6.4
SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08) 28 6.4
SB_2435| Best HMM Match : WD40 (HMM E-Value=4.1e-10) 28 6.4
SB_27648| Best HMM Match : Ribosomal_L18ae (HMM E-Value=2.8) 28 6.4
SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_49489| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_40387| Best HMM Match : GrpE (HMM E-Value=0) 28 8.5
SB_14541| Best HMM Match : ResIII (HMM E-Value=0.66) 28 8.5
SB_13459| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_5034| Best HMM Match : Extensin_2 (HMM E-Value=0.0055) 28 8.5
SB_9481| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_54589| Best HMM Match : Extensin_2 (HMM E-Value=0.0081)
Length = 667
Score = 42.7 bits (96), Expect = 3e-04
Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Frame = -1
Query: 649 DSPQGEVSPQHRDEI--SPRVLPTRARFERVCASSSGCPHWWQPGCGSLCRPSTGTSRNS 476
D P G SP SP P RA F SS P + GS C PS+ + ++
Sbjct: 255 DIPDGTQSPPPSSPFLQSPMTSPRRATFTVGSPSSPPTPRTRRYSSGSRCSPSSQSPQDF 314
Query: 475 HVPRGPAQGERRVRR---DADPTMPPARAP 395
H P G + R +RR + P +PP+ P
Sbjct: 315 HQPAGHSPHSRPIRRTHSSSSPGVPPSPPP 344
>SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 2675
Score = 33.9 bits (74), Expect = 0.13
Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 6/86 (6%)
Frame = -1
Query: 586 TRARFERVCASSSGCPHWWQPGCGSLCRPSTGTS---RNSHVPRGPAQGERRVRR---DA 425
TR + ++ C S CP W S C + GT RN + + R V R D
Sbjct: 387 TRPQNQKQCVSDRVCPPMWHASQWSRCTATCGTGMKMRNVVCAQDEGKILRVVPRDLCDR 446
Query: 424 DPTMPPARAPGPRGCDGGWLKFGQVP 347
+ +MP R C GW F P
Sbjct: 447 NHSMPSIEKCSTRPCQAGWYIFPWQP 472
>SB_59555| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 898
Score = 31.1 bits (67), Expect = 0.91
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = -2
Query: 384 GATAGG*SLAKFLQQSLSPL---SVCYMTRSTLPPTDSR 277
G T GG S A LQQ++ P+ S C T L P DSR
Sbjct: 161 GRTVGGGSAAGILQQAMLPVAGDSDCQRTNGRLVPVDSR 199
>SB_15012| Best HMM Match : zf-CCHC (HMM E-Value=1.1e-05)
Length = 410
Score = 31.1 bits (67), Expect = 0.91
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +3
Query: 528 CHQCGHPDDDAHTRSKRARVGSTRGEISSRCWGETSPCGLSSP 656
CHQ GHP R + R G+ G + +RC P SP
Sbjct: 155 CHQVGHPISTCPVRGRCFRCGAA-GHVVARCPALAVPVAAGSP 196
>SB_49862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 639
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Frame = -2
Query: 360 LAKFLQQSLSPLSVCYMT-----RSTLPPTDSRRAGRPSPIKACALRRYTAAKISASRSQ 196
L + LQ SL S M + L T G+PS +K LRRYTA I
Sbjct: 209 LTRLLQDSLGGNSKTIMVSGKNVHNLLITTCKNLNGKPSGVKKAELRRYTAKNIKNKAKI 268
Query: 195 GRDPARA 175
DP A
Sbjct: 269 NEDPKDA 275
>SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3)
Length = 1353
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = -2
Query: 345 QQSLSPLSVCYMTRSTLPPTDSRRAGRPSPIKACALRRYTAAKISASRSQGRDPARAQ 172
+Q+ P +MT+++ P ++A RP K+C + AA S+ Q +D A+
Sbjct: 526 KQASRPRQASHMTKTSKPQDQDKKAARPGE-KSCKKSKPQAASRKKSKPQDQDKQAAR 582
>SB_42623| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 121
Score = 29.9 bits (64), Expect = 2.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 492 PVEGLQREPHPGCHQCGHPDDD 557
P+ + +EPHP C Q HP D
Sbjct: 75 PIPRVTKEPHPSCDQRSHPSCD 96
>SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1417
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +1
Query: 343 LKELGQTSATRRRTLEALVPVLEAWSDRRHGVLSFHLAQVLSGHGCFGRYLW 498
L+++ T A + L A++P LEA +++ + V + LS GC G Y W
Sbjct: 62 LRQVAVTKADQVPQLRAIIPYLEASTNQEYLV---QRIRELSKGGCLGVYRW 110
>SB_55440| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 567 RSKRARVGSTRGEISSRCWGETSPCGLSSPAC*RI 671
R K+A+ G RG+ + W ET+ GL + R+
Sbjct: 103 RPKKAKRGGARGQAKNSAWEETTNAGLKAQLIARV 137
>SB_52076| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +3
Query: 147 TAPSLKMWPALSPDP--YPGTSRPKSWLRY 230
T PSL M+P +P P YP T++P + Y
Sbjct: 25 TTPSLAMYPNTTPSPAMYPNTTQPLAMYPY 54
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +3
Query: 147 TAPSLKMWPALSPDP--YPGTSRP 212
T PSL M+P +P P YP T++P
Sbjct: 95 TTPSLAMYPNTTPSPAMYPNTTQP 118
>SB_41992| Best HMM Match : efhand (HMM E-Value=2.4e-10)
Length = 1303
Score = 29.1 bits (62), Expect = 3.7
Identities = 21/81 (25%), Positives = 33/81 (40%)
Frame = -1
Query: 631 VSPQHRDEISPRVLPTRARFERVCASSSGCPHWWQPGCGSLCRPSTGTSRNSHVPRGPAQ 452
+SP+ R +SP++ + +SSS GC + +G S N+ + P
Sbjct: 764 LSPKPRKNVSPKITVNSTNGDLRESSSSSSSELSSQGCSA---SDSGISMNN--DQSPTI 818
Query: 451 GERRVRRDADPTMPPARAPGP 389
RRV D P+ P P
Sbjct: 819 HNRRVGTGGDGVETPSSGPSP 839
>SB_50665| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 625
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 567 RSKRARVGSTRGEISSRCWGETSPCGLSSPAC*RI 671
R K+A+ G RG+ + W ET+ GL + R+
Sbjct: 103 RPKKAKRGGARGQAKNSAWEETTNAGLKAQLIARV 137
>SB_43654| Best HMM Match : zf-AD (HMM E-Value=0.2)
Length = 284
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 567 RSKRARVGSTRGEISSRCWGETSPCGLSSPAC*RI 671
R K+A+ G RG+ + W ET+ GL + R+
Sbjct: 205 RPKKAKRGGARGQAKNSAWEETTNAGLKAQLIARV 239
>SB_26268| Best HMM Match : TIMP (HMM E-Value=2e-06)
Length = 273
Score = 29.1 bits (62), Expect = 3.7
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -1
Query: 574 FERVCASSSGCPHWWQPGCGS 512
++R C C WW PGC S
Sbjct: 190 YKRNCGCRVDCQRWWLPGCRS 210
>SB_22842| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 757
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 567 RSKRARVGSTRGEISSRCWGETSPCGLSSPAC*RI 671
R K+A+ G RG+ + W ET+ GL + R+
Sbjct: 254 RPKKAKRGGARGQAKNSAWEETTNAGLKAQLIARV 288
>SB_5598| Best HMM Match : C1_1 (HMM E-Value=0.87)
Length = 296
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 567 RSKRARVGSTRGEISSRCWGETSPCGLSSPAC*RI 671
R K+A+ G RG+ + W ET+ GL + R+
Sbjct: 41 RPKKAKRGGARGQAKNSAWEETTNAGLKAQLIARV 75
>SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 970
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -1
Query: 109 SEQQRRVSRGECGRPHGSTVQGHTAHHPKVQSP 11
S ++R+++ GE P S+V+G +H K +SP
Sbjct: 356 SGEERKLAGGEPAVPQDSSVEGAASHKKKGESP 388
>SB_36315| Best HMM Match : Hom_end (HMM E-Value=4.1)
Length = 242
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = -2
Query: 621 STATRSRRECSQRGHVSSACARHRPGARTGGSPDVALSADLPQVPPETAMSR 466
+TA+ SRR+ S+R +S R R + TGG + A+ + + P A SR
Sbjct: 24 TTASSSRRKTSERRRKTSTRRRRRATSNTGG--NTAVRMPVTKFTPIKASSR 73
>SB_20442| Best HMM Match : Chitin_bind_3 (HMM E-Value=7.4e-05)
Length = 288
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/57 (26%), Positives = 23/57 (40%)
Frame = +3
Query: 42 WPCTVLPCGRPHSPRETRLCCSELXXXXXXXXXXXTAPSLKMWPALSPDPYPGTSRP 212
W C CG H P+E + C+++ TA +P P P T++P
Sbjct: 179 WGCDSDGCGMGHGPQEHFVNCADITIKPRSGPLPPTAAPPPPPTTGAPPPTPVTNKP 235
>SB_49185| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -1
Query: 154 GAVPPDDPHRE-RPLSSEQQRRVSRGECGRPHGSTVQGHT 38
G P DP++E R + QR+V R E GRP G++
Sbjct: 268 GTREPKDPYQEARSILENAQRQVDRFERGRPRDEPDAGYS 307
>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
Length = 1952
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -1
Query: 154 GAVPPDDPHRE-RPLSSEQQRRVSRGECGRPHGSTVQGHT 38
G P DP++E R + QR+V R E GRP G++
Sbjct: 1849 GTREPKDPYQEARSILENAQRQVDRFERGRPRDEPDAGYS 1888
>SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1788
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +1
Query: 199 GPRGRNLGCGISA*GAGLDRGRSPGPSAVGRWKRAARHVAYAKWRERLL 345
GP G G S G G R + PG S WK + HV + +R L+
Sbjct: 817 GPGSGRKGPGTSPDGPGTGR-KGPGTSPDVPWKWSVEHVLFPAFRSGLV 864
>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4856
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2
Query: 441 EYAVTPIRPCLQHGHQGLEGATA 373
EY TP++PC ++ HQ EGA++
Sbjct: 824 EYG-TPLKPCYENVHQEFEGASS 845
>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5834
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 4/78 (5%)
Frame = -1
Query: 586 TRARFERVCASSSGCPHWWQPGCGSLCRPSTGTSRNSHVP----RGPAQGERRVRRDADP 419
T +++C G +W CG LC+ N H G + + R +
Sbjct: 5379 TNTTSDKICECEQG---YWGEDCGKLCKGGIWNVCNGHGTCNRWTGDCLCDLKWNRTTNS 5435
Query: 418 TMPPARAPGPRGCDGGWL 365
T P + + C GW+
Sbjct: 5436 TQDPTHSLPCKKCSEGWV 5453
>SB_22560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 308
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Frame = +3
Query: 303 CASCSIR*VERAIAEGT----WPNFSHPPSHPRGPGAR--AGGMVGSASRRTLLSPCA 458
C C + +E A+ WP FS P HP R +G +V S+S + PC+
Sbjct: 113 CKWCDLDILEMAVGSCMNWLKWPKFSQIPDHPLLVCFRTHSGMIVSSSSNHEFVFPCS 170
>SB_21129| Best HMM Match : Pkinase (HMM E-Value=2.5e-07)
Length = 786
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = -1
Query: 160 RDGAVPPDDPHRERPLSSEQQRRVSRGECGRPHGSTV 50
RD PP P R+RP S V+ G GS V
Sbjct: 157 RDPKHPPSPPVRQRPSSCPSTENVTTGSSSHVRGSDV 193
>SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08)
Length = 865
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -1
Query: 493 GTSRNSHVPRGPAQGERRVRRDADPTMPPARAPGPRGCDG 374
GTS S PRG + + R R + ++ P+R DG
Sbjct: 186 GTSNRSPSPRGRSHSDERKRASKEKSVSPSRGALSSAADG 225
>SB_2435| Best HMM Match : WD40 (HMM E-Value=4.1e-10)
Length = 1272
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Frame = -1
Query: 178 SAGHILRDGAVPPDDPHRERPLSSEQQRRVSRGE-CGRPHGSTVQGHTAH 32
S H R PP P + L+S R RG G PH +T H H
Sbjct: 1143 SPDHQYRTPPPPPRSPECQPTLNSSPSPRTYRGPLTGNPHVTTQLSHGRH 1192
>SB_27648| Best HMM Match : Ribosomal_L18ae (HMM E-Value=2.8)
Length = 796
Score = 28.3 bits (60), Expect = 6.4
Identities = 23/70 (32%), Positives = 31/70 (44%)
Frame = -2
Query: 651 TTARRERFLPSTATRSRRECSQRGHVSSACARHRPGARTGGSPDVALSADLPQVPPETAM 472
T R++R S T S R + R + ACAR AR+ G+P SA P +A
Sbjct: 435 TEQRKKRHFMSCNTLSLRSLASRRD-ARACARAEDAARSAGTP----SAHTPVPESNSAW 489
Query: 471 SREDLRKVKG 442
S + V G
Sbjct: 490 SASSVIGVAG 499
>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2077
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/76 (23%), Positives = 27/76 (35%)
Frame = -1
Query: 622 QHRDEISPRVLPTRARFERVCASSSGCPHWWQPGCGSLCRPSTGTSRNSHVPRGPAQGER 443
QH +I V P + + + C + C H CG C +P G +
Sbjct: 1822 QHEQQIPCHVEPEKFKCQEPCPKTLKCGHQCAAKCGDDCTKECMVMIERTLPCG---HKH 1878
Query: 442 RVRRDADPTMPPARAP 395
++ DPT R P
Sbjct: 1879 TLKCHVDPTTVKCRTP 1894
>SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1524
Score = 27.9 bits (59), Expect = 8.5
Identities = 42/170 (24%), Positives = 59/170 (34%), Gaps = 1/170 (0%)
Frame = -1
Query: 547 GCPHWWQPGCGSLCR-PSTGTSRNSHVPRGPAQGERRVRRDADPTMPPARAPGPRGCDGG 371
G P++ PG R P + + VPRG R V RD+ M R P P G
Sbjct: 1262 GEPYYQYPGDHEGFRLPPSREPEDLKVPRGKLVPIRAVIRDSGVVMRAERPPTPPGVSHR 1321
Query: 370 WLKFGQVPSAIALST*RMLHDAQHASTDRQPTGRATVPDQGLRLTPIYRSQDFGLEVPG* 191
++ IA H+ R P R +P Q R +P R G
Sbjct: 1322 VPSDQEIFRPIAAEITHEQHNEPVFEDQRYPV-REEMP-QADRYSPRERVPSHERHTKGR 1379
Query: 190 GSGESAGHILRDGAVPPDDPHRERPLSSEQQRRVSRGECGRPHGSTVQGH 41
+G S G+ D P + + R S G+ R S+ + H
Sbjct: 1380 YNGYSNGY--NDN--QPKEKRSSEYQDDPRDNRDSYGDYSRSSRSSYEDH 1425
>SB_49489| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 485
Score = 27.9 bits (59), Expect = 8.5
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +3
Query: 147 TAPSLKMWPALSPDPYPGTSR-PKSWLRYIGVRRRP*SGTVARPVGCRSVEACCASCS 317
TAP M P+L P + + R P S + + R P + +VARP + E+C A C+
Sbjct: 203 TAPKSHMPPSL-PFTHGSSMRAPNS--SCLSLHRHPCTMSVARPTYSQCTESCKAECN 257
>SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1958
Score = 27.9 bits (59), Expect = 8.5
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Frame = -2
Query: 657 RATTARRERFL-PSTATRSRRECSQRGHVSSACA-----RHRPGARTGGSPDVALSADLP 496
RA AR R PS + C +RGHV+ C R R A + G +V ++D P
Sbjct: 94 RAPIARGRRDQEPSGDRPTCYNCGERGHVAIGCRNPPQFRKRTEASSMGQSEVLNNSDSP 153
Query: 495 QVPPETAMSREDLRKVKGE 439
PP +RE + GE
Sbjct: 154 --PPVGISARELPSDLVGE 170
>SB_40387| Best HMM Match : GrpE (HMM E-Value=0)
Length = 328
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +1
Query: 361 TSATRRRTLEALVPVLEAWSDRRHGVLSFHLAQVLSGHGCF 483
+ T R+TLE L PV A S LS+ L + L CF
Sbjct: 89 SQTTGRKTLEKLFPVNTAVSSLAEENLSYRLLETLRKPPCF 129
>SB_14541| Best HMM Match : ResIII (HMM E-Value=0.66)
Length = 822
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = -1
Query: 472 VPRGPAQGER--RVRRDADPTMPPARAPGPRGCD 377
+P P+ R +V R+ DP +P R GP G D
Sbjct: 22 IPEAPSVRARPEKVWREFDPLLPERRQKGPEGLD 55
>SB_13459| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 395
Score = 27.9 bits (59), Expect = 8.5
Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 7/101 (6%)
Frame = -2
Query: 702 KNLAMASNEP*SSNMRATTA--RRERFLPSTATRSRR-----ECSQRGHVSSACARHRPG 544
+++ + P ++N R A +RE +P+ S+ + Q+G S+ H
Sbjct: 197 RHIKVRKEIPAAANDRKAEAVDQRETQIPAALCASQENTQTEDSHQKGKSSNGAIPHG-N 255
Query: 543 ARTGGSPDVALSADLPQVPPETAMSREDLRKVKGEYAVTPI 421
+T D L+A L V SR+D ++ + +TP+
Sbjct: 256 EKTNDHQDETLAASLNSVNETPMNSRQDQKETNTSHGITPL 296
>SB_5034| Best HMM Match : Extensin_2 (HMM E-Value=0.0055)
Length = 695
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = -2
Query: 294 PPTDSRRAGRPSPIKACALRRYTAAKISASRSQGRDPARAQATS*EMVRYP 142
PP +R G P A ALR +K S GR + ATS + +P
Sbjct: 470 PPLPPKRGGGPPLFGAMALRTGAPSKASKPSFGGRGQPQVFATSASEILHP 520
>SB_9481| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 27.9 bits (59), Expect = 8.5
Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = -2
Query: 621 STATRSRRECSQRGHVSSACARHRPGARTGGSPDVALS---ADLPQV 490
STA R E +S CARHR GG+ D LS D PQV
Sbjct: 134 STAIRGM-ELKAEIRISRDCARHRAQTAGGGAIDSQLSIMLMDTPQV 179
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,226,822
Number of Sequences: 59808
Number of extensions: 676945
Number of successful extensions: 3353
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 2729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3350
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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