Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021184
(706 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93379-3|CAB07590.1| 282|Caenorhabditis elegans Hypothetical pr... 31 0.80
AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen prot... 31 1.1
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 1.4
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 1.4
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 1.4
Z82051-2|CAB04816.1| 237|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z81066-7|CAB02973.1| 244|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z71177-3|CAA94869.1| 325|Caenorhabditis elegans Hypothetical pr... 30 1.9
AL022289-6|CAA18377.1| 244|Caenorhabditis elegans Hypothetical ... 30 1.9
AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein. 29 2.4
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 29 2.4
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 29 2.4
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 29 2.4
AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated... 29 2.4
AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated... 29 2.4
Z71178-2|CAA94875.1| 297|Caenorhabditis elegans Hypothetical pr... 29 3.2
AF067940-6|AAC19205.1| 223|Caenorhabditis elegans Hypothetical ... 29 4.3
AF067940-5|AAC19204.1| 223|Caenorhabditis elegans Hypothetical ... 29 4.3
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical pr... 28 7.5
U40797-6|AAB37547.1| 235|Caenorhabditis elegans Hypothetical pr... 28 7.5
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 28 7.5
AL033514-4|CAA22094.2| 827|Caenorhabditis elegans Hypothetical ... 28 7.5
U80437-19|AAB37630.2| 580|Caenorhabditis elegans Conserved olig... 27 9.9
U41015-4|AAA82313.1| 317|Caenorhabditis elegans Hypothetical pr... 27 9.9
AC024136-6|AAF35965.3| 425|Caenorhabditis elegans Hypothetical ... 27 9.9
>Z93379-3|CAB07590.1| 282|Caenorhabditis elegans Hypothetical
protein F21H7.4 protein.
Length = 282
Score = 31.1 bits (67), Expect = 0.80
Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 1/97 (1%)
Frame = -1
Query: 523 GCGSLCRPSTGTSRNSHVPRGPAQGERRVRRDAD-PTMPPARAPGPRGCDGGWLKFGQVP 347
G G S+ +S +S G + R R P PP P P CD GWL+F + P
Sbjct: 55 GGGGYYSHSSSSSSSSSEEHGHHRPPHRPHRPPHRPHRPPRPPPRPE-CDEGWLRF-ERP 112
Query: 346 SAIALST*RMLHDAQHASTDRQPTGRATVPDQGLRLT 236
+ + ++H QP +A G LT
Sbjct: 113 NGVWCI--NVVHSGVTNGYFSQPQAQAACSASGATLT 147
>AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen protein
141 protein.
Length = 314
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/34 (52%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 115 AGARGE-GHQGVPHHLSRCGLRSRRIPTLGPRGR 213
AGA G+ GH G P + R G RSR +P GP GR
Sbjct: 185 AGAPGQPGHPGSPGNPGRGGQRSRGLP--GPSGR 216
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.3 bits (65), Expect = 1.4
Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Frame = -1
Query: 601 PRVLPTRARFERVCASSSGCPHWWQPGCGSLCRPSTGTSRNSHVPRGPAQGERRVRRDAD 422
P LP+R + + +G P P G R G S +S GP R +
Sbjct: 437 PTGLPSRQKRQAPEDRPTGSPPTGSPPTGRPHRGGPGKSESSESREGPRGPRRSPPTGSP 496
Query: 421 PT-MPPARAPGPRG 383
PT PP AP +G
Sbjct: 497 PTGSPPTGAPPKKG 510
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.3 bits (65), Expect = 1.4
Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Frame = -1
Query: 601 PRVLPTRARFERVCASSSGCPHWWQPGCGSLCRPSTGTSRNSHVPRGPAQGERRVRRDAD 422
P LP+R + + +G P P G R G S +S GP R +
Sbjct: 458 PTGLPSRQKRQAPEDRPTGSPPTGSPPTGRPHRGGPGKSESSESREGPRGPRRSPPTGSP 517
Query: 421 PT-MPPARAPGPRG 383
PT PP AP +G
Sbjct: 518 PTGSPPTGAPPKKG 531
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.3 bits (65), Expect = 1.4
Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Frame = -1
Query: 601 PRVLPTRARFERVCASSSGCPHWWQPGCGSLCRPSTGTSRNSHVPRGPAQGERRVRRDAD 422
P LP+R + + +G P P G R G S +S GP R +
Sbjct: 443 PTGLPSRQKRQAPEDRPTGSPPTGSPPTGRPHRGGPGKSESSESREGPRGPRRSPPTGSP 502
Query: 421 PT-MPPARAPGPRG 383
PT PP AP +G
Sbjct: 503 PTGSPPTGAPPKKG 516
>Z82051-2|CAB04816.1| 237|Caenorhabditis elegans Hypothetical
protein T23D5.3 protein.
Length = 237
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Frame = -2
Query: 657 RATTARRERFLPSTATRSRRECSQRGHVSSACARHRPGARTGGSPDVALSADLPQVPPET 478
+ T R E + +T G V++A + G+ T GSP A +A PP T
Sbjct: 89 KTTPQRVEPVMTTTVAPGATTVRSPGSVTTAGSATTAGSATTGSPSAATTAATVAAPPTT 148
Query: 477 AMSREDLR-KVKGEYAVTPIRP 415
+ L K Y P +P
Sbjct: 149 TAAVSILTLKSAFLYVTKPFQP 170
>Z81066-7|CAB02973.1| 244|Caenorhabditis elegans Hypothetical
protein F17B5.5 protein.
Length = 244
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -1
Query: 448 ERRVRRDADPTMP-PARAPGPRG-CDGGWLKF 359
E R R P P P+R PRG CD GWL+F
Sbjct: 46 EHRHRPPHRPRPPRPSRPTTPRGECDDGWLRF 77
>Z71177-3|CAA94869.1| 325|Caenorhabditis elegans Hypothetical
protein AC3.6 protein.
Length = 325
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = -1
Query: 190 GSGESAGHILRDGAVPPDDPHRERPLSSEQQRRVSRGECGRPHGSTVQGH 41
GS AG R G P P P+S E +G+ G+P G V GH
Sbjct: 218 GSPGPAGSPGRVGRGGPPGPDGGYPMSGEPGSSGPQGKAGQPGGPGVDGH 267
>AL022289-6|CAA18377.1| 244|Caenorhabditis elegans Hypothetical
protein F17B5.5 protein.
Length = 244
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -1
Query: 448 ERRVRRDADPTMP-PARAPGPRG-CDGGWLKF 359
E R R P P P+R PRG CD GWL+F
Sbjct: 46 EHRHRPPHRPRPPRPSRPTTPRGECDDGWLRF 77
>AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein.
Length = 468
Score = 29.5 bits (63), Expect = 2.4
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = -2
Query: 669 SSNMRATTARRERFLPSTA---TRSRRECSQRGHVSSACA-RHRPGARTGGSPDVALSAD 502
++N R T+ L STA T+ +R SQ S+ + H P P V L+++
Sbjct: 157 AANFRKTSQHASSLLSSTAAALTQQQRRASQSSSTSAGSSIPHAP------PPPVPLTSN 210
Query: 501 LPQVPP 484
+PQ PP
Sbjct: 211 IPQAPP 216
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 29.5 bits (63), Expect = 2.4
Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 12/87 (13%)
Frame = -2
Query: 600 RECSQRGHVSSACARHR----PGARTGGSPDVALSADLPQVP--PETAMSRE-----DLR 454
R C Q GH +S C + R P G A+ D P+VP P +E D +
Sbjct: 596 RNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAVDCDQPKVPRGPCRNCGQEGHFAKDCQ 655
Query: 453 KVKGEYAVT-PIRPCLQHGHQGLEGAT 376
+ T P R C + GH G E T
Sbjct: 656 NERVRMEPTEPCRRCAEEGHWGYECPT 682
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 29.5 bits (63), Expect = 2.4
Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 12/87 (13%)
Frame = -2
Query: 600 RECSQRGHVSSACARHR----PGARTGGSPDVALSADLPQVP--PETAMSRE-----DLR 454
R C Q GH +S C + R P G A+ D P+VP P +E D +
Sbjct: 596 RNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAVDCDQPKVPRGPCRNCGQEGHFAKDCQ 655
Query: 453 KVKGEYAVT-PIRPCLQHGHQGLEGAT 376
+ T P R C + GH G E T
Sbjct: 656 NERVRMEPTEPCRRCAEEGHWGYECPT 682
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 115 AGARGE-GHQGVPHHLSRCGLRSRRIPTLGPRGR 213
AG+ G+ GH G P + R G RSR +P GP GR
Sbjct: 178 AGSPGQPGHPGSPGNPGRGGQRSRGLP--GPSGR 209
>AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated
protein 34, isoform b protein.
Length = 310
Score = 29.5 bits (63), Expect = 2.4
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = -2
Query: 669 SSNMRATTARRERFLPSTA---TRSRRECSQRGHVSSACA-RHRPGARTGGSPDVALSAD 502
++N R T+ L STA T+ +R SQ S+ + H P P V L+++
Sbjct: 143 AANFRKTSQHASSLLSSTAAALTQQQRRASQSSSTSAGSSIPHAP------PPPVPLTSN 196
Query: 501 LPQVPP 484
+PQ PP
Sbjct: 197 IPQAPP 202
>AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated
protein 34, isoform a protein.
Length = 454
Score = 29.5 bits (63), Expect = 2.4
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = -2
Query: 669 SSNMRATTARRERFLPSTA---TRSRRECSQRGHVSSACA-RHRPGARTGGSPDVALSAD 502
++N R T+ L STA T+ +R SQ S+ + H P P V L+++
Sbjct: 143 AANFRKTSQHASSLLSSTAAALTQQQRRASQSSSTSAGSSIPHAP------PPPVPLTSN 196
Query: 501 LPQVPP 484
+PQ PP
Sbjct: 197 IPQAPP 202
>Z71178-2|CAA94875.1| 297|Caenorhabditis elegans Hypothetical
protein B0024.2 protein.
Length = 297
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Frame = +2
Query: 362 LQPPAVAPSRPWCPCWRHGRIGVTAYSPFTLRRSSRDMAVSG--GTCGRSAERATSGLPP 535
+ PP+ P+ +R R + + ++ G G GR +R TSG P
Sbjct: 65 VSPPSKPKENPFNSVFRQKRQTFSGLPSWCQCEPAKPRCPRGPPGPPGRPGQRGTSGSPG 124
Query: 536 VRAPGR*RAHALETCPR 586
R + HA CPR
Sbjct: 125 PRGQDNHQVHAPIQCPR 141
>AF067940-6|AAC19205.1| 223|Caenorhabditis elegans Hypothetical
protein F36F12.6 protein.
Length = 223
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = -1
Query: 451 GERRVRRDADPTMPPARAPGPRGCDGGWLKFGQVPS 344
G R P PP G R CD GW KF PS
Sbjct: 28 GGRGGHNHGRPPRPPGNGGGGRVCDAGW-KFFSRPS 62
>AF067940-5|AAC19204.1| 223|Caenorhabditis elegans Hypothetical
protein F36F12.5 protein.
Length = 223
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = -1
Query: 451 GERRVRRDADPTMPPARAPGPRGCDGGWLKFGQVPS 344
G R P PP G R CD GW KF PS
Sbjct: 28 GGRGGHNHGRPPRPPGNGGGGRVCDAGW-KFFSRPS 62
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
protein F29D11.1 protein.
Length = 4753
Score = 27.9 bits (59), Expect = 7.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 597 ECSQRGHVSSACARHRPG 544
EC++ G+ CA HRPG
Sbjct: 341 ECAEFGYCDQLCANHRPG 358
>Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.6 protein.
Length = 290
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = -1
Query: 469 PRGPAQGERRVRRDADPTMPPARAPGPRGCDGG 371
P P QG +R R T PA APGP+G GG
Sbjct: 187 PGAPGQGGQRSRG----TPGPAGAPGPQGPAGG 215
>U40797-6|AAB37547.1| 235|Caenorhabditis elegans Hypothetical
protein C28C12.4 protein.
Length = 235
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +1
Query: 178 SRRIPTLGPRGRNL--GCGISA*GAGLDRGRSPGPSAV 285
SR P +G GR G G+ GAGL +GR GP ++
Sbjct: 189 SREGPMMGGMGRGGFGGQGMGGMGAGLGQGRRGGPDSM 226
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
receptor-related protein protein.
Length = 4753
Score = 27.9 bits (59), Expect = 7.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 597 ECSQRGHVSSACARHRPG 544
EC++ G+ CA HRPG
Sbjct: 341 ECAEFGYCDQLCANHRPG 358
>AL033514-4|CAA22094.2| 827|Caenorhabditis elegans Hypothetical
protein Y75B8A.3 protein.
Length = 827
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -1
Query: 313 HDAQHASTDRQPTGRATVPDQGLRLTPIYRSQD 215
H + T GR TVPD G P+++ QD
Sbjct: 654 HVRVYQFTHVSEVGRNTVPDTGANWKPVFKGQD 686
>U80437-19|AAB37630.2| 580|Caenorhabditis elegans Conserved
oligomeric golgi (cog)component protein 5 protein.
Length = 580
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 658 AGDDSPQGEVSPQHRDEISPR 596
+G +PQ EVSP + E SPR
Sbjct: 86 SGTTTPQSEVSPSKQSEASPR 106
>U41015-4|AAA82313.1| 317|Caenorhabditis elegans Hypothetical
protein F20B6.5 protein.
Length = 317
Score = 27.5 bits (58), Expect = 9.9
Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 1/96 (1%)
Frame = -1
Query: 658 AGDDSPQGEVSPQHRDEISPRVLPTRARFERVCASSSGCPHWWQPGC-GSLCRPSTGTSR 482
A DD ++S ++PR R R R S++ QP + RPS R
Sbjct: 104 AFDDGNDSQMSGVRAPPVTPR---NRQRSVRPSGSNAQPSGRAQPDYRDTRQRPSQSRDR 160
Query: 481 NSHVPRGPAQGERRVRRDADPTMPPARAPGPRGCDG 374
+ G G + R+ D + AR GPR G
Sbjct: 161 SKQNRTGTPHGAEELGREPDRSSRSARNEGPRAETG 196
>AC024136-6|AAF35965.3| 425|Caenorhabditis elegans Hypothetical
protein F54A3.1 protein.
Length = 425
Score = 27.5 bits (58), Expect = 9.9
Identities = 22/83 (26%), Positives = 33/83 (39%)
Frame = -1
Query: 634 EVSPQHRDEISPRVLPTRARFERVCASSSGCPHWWQPGCGSLCRPSTGTSRNSHVPRGPA 455
E+ + SP +L A+ ++ ASS+ P G+ RPS+ + P A
Sbjct: 194 ELEKEFGSSASPEMLRL-AKHYKIGASSTSAPPK-TTAAGAPKRPSSAVAPRRAPPASAA 251
Query: 454 QGERRVRRDADPTMPPARAPGPR 386
R A P RAP P+
Sbjct: 252 PTRRAPSPKAPVVAPTRRAPSPK 274
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,683,027
Number of Sequences: 27780
Number of extensions: 450867
Number of successful extensions: 1655
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1648
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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