Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021184
         (706 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   3.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   3.7  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   3.7  
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    22   4.9  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   4.9  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    22   6.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   6.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   6.5  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   8.6  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 337 RLLKELGQTSATRRRTLEALVPVLEA 414
           RL+++      ++R  L A+VPVLE+
Sbjct: 833 RLMEQCWSGEPSKRPLLGAIVPVLES 858


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 337 RLLKELGQTSATRRRTLEALVPVLEA 414
           RL+++      ++R  L A+VPVLE+
Sbjct: 871 RLMEQCWSGEPSKRPLLGAIVPVLES 896


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -1

Query: 622 QHRDEISPRV 593
           QHRD +SPRV
Sbjct: 730 QHRDSLSPRV 739


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 486 PETAMSREDLRKVKGEYA 433
           P TA S E L ++K E+A
Sbjct: 23  PRTAFSAEQLARLKREFA 40


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -1

Query: 82  GECGRPHGSTVQGHTAHH 29
           G C  P G  + G T HH
Sbjct: 140 GSCYWPRGKNLGGTTLHH 157


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 486 PETAMSREDLRKVKGEYA 433
           P TA S E L ++K E+A
Sbjct: 23  PRTAFSGEQLARLKREFA 40


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 535 WWQPGCGSLCRPSTGTSRNSHVPRGPAQGERR 440
           W++   G + R S   SRN  + RG     RR
Sbjct: 25  WFRISAGCVSRISNRISRNRVLLRGQCISSRR 56


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 16/44 (36%), Positives = 17/44 (38%)
 Frame = -1

Query: 526 PGCGSLCRPSTGTSRNSHVPRGPAQGERRVRRDADPTMPPARAP 395
           P  GSL  P T T          AQ  R  RR  DP    A+ P
Sbjct: 151 PRGGSLPTPVTPTPTTVQQLLRRAQIRRNERRTPDPHDETAKKP 194


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 195 PGTSRPKSWLRYIGVRRRP 251
           P T +   W+R I +RR P
Sbjct: 327 PSTHKMAPWVRKIFIRRLP 345


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,488
Number of Sequences: 438
Number of extensions: 5805
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)